Phelan JE - Search Results

1

Rapid profiling of Plasmodium parasites from genome sequences to assist malaria control.

Phelan JE, Turkiewicz A, Manko E, Thorpe J, Vanheer LN, van de Vegte-Bolmer M, Ngoc NTH, Binh NTH, Thieu NQ, Gitaka J, Nolder D, Beshir KB, Dombrowski JG, Di Santi SM, Bousema T, Sutherland CJ, Campino S, Clark TG. Phelan JE, et al. Genome Med. 2023 Nov 10;15(1):96. doi: 10.1186/s13073-023-01247-7. Genome Med. 2023. PMID: 37950308 Free PMC article.

2

Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages.

Phelan JE, Coll F, Bergval I, Anthony RM, Warren R, Sampson SL, Gey van Pittius NC, Glynn JR, Crampin AC, Alves A, Bessa TB, Campino S, Dheda K, Grandjean L, Hasan R, Hasan Z, Miranda A, Moore D, Panaiotov S, Perdigao J, Portugal I, Sheen P, de Oliveira Sousa E, Streicher EM, van Helden PD, Viveiros M, Hibberd ML, Pain A, McNerney R, Clark TG. Phelan JE, et al. BMC Genomics. 2016 Feb 29;17:151. doi: 10.1186/s12864-016-2467-y. BMC Genomics. 2016. PMID: 26923687 Free PMC article.

3

Mycobacterium tuberculosis whole genome sequencing and protein structure modelling provides insights into anti-tuberculosis drug resistance.

Phelan J, Coll F, McNerney R, Ascher DB, Pires DE, Furnham N, Coeck N, Hill-Cawthorne GA, Nair MB, Mallard K, Ramsay A, Campino S, Hibberd ML, Pain A, Rigouts L, Clark TG. Phelan J, et al. BMC Med. 2016 Mar 23;14:31. doi: 10.1186/s12916-016-0575-9. BMC Med. 2016. PMID: 27005572 Free PMC article.

4

The draft genome of Mycobacterium aurum, a potential model organism for investigating drugs against Mycobacterium tuberculosis and Mycobacterium leprae.

Phelan J, Maitra A, McNerney R, Nair M, Gupta A, Coll F, Pain A, Bhakta S, Clark TG. Phelan J, et al. Int J Mycobacteriol. 2015 Sep;4(3):207-16. doi: 10.1016/j.ijmyco.2015.05.001. Epub 2015 Jun 4. Int J Mycobacteriol. 2015. PMID: 27649868 Free article.

5

The variability and reproducibility of whole genome sequencing technology for detecting resistance to anti-tuberculous drugs.

Phelan J, O'Sullivan DM, Machado D, Ramos J, Whale AS, O'Grady J, Dheda K, Campino S, McNerney R, Viveiros M, Huggett JF, Clark TG. Phelan J, et al. Genome Med. 2016 Dec 22;8(1):132. doi: 10.1186/s13073-016-0385-x. Genome Med. 2016. PMID: 28003022 Free PMC article.

6

Primary macrophages and J774 cells respond differently to infection with Mycobacterium tuberculosis.

Andreu N, Phelan J, de Sessions PF, Cliff JM, Clark TG, Hibberd ML. Andreu N, et al. Sci Rep. 2017 Feb 8;7:42225. doi: 10.1038/srep42225. Sci Rep. 2017. PMID: 28176867 Free PMC article.

7

Pyrazinamide resistance-conferring mutations in pncA and the transmission of multidrug resistant TB in Georgia.

Sengstake S, Bergval IL, Schuitema AR, de Beer JL, Phelan J, de Zwaan R, Clark TG, van Soolingen D, Anthony RM. Sengstake S, et al. BMC Infect Dis. 2017 Jul 12;17(1):491. doi: 10.1186/s12879-017-2594-3. BMC Infect Dis. 2017. PMID: 28697808 Free PMC article.

8

Single nucleotide polymorphisms in efflux pumps genes in extensively drug resistant Mycobacterium tuberculosis isolates from Pakistan.

Kanji A, Hasan R, Ali A, Zaver A, Zhang Y, Imtiaz K, Shi W, Clark TG, McNerney R, Phelan J, Rao S, Shafiq S, Hasan Z. Kanji A, et al. Tuberculosis (Edinb). 2017 Dec;107:20-30. doi: 10.1016/j.tube.2017.07.012. Epub 2017 Aug 3. Tuberculosis (Edinb). 2017. PMID: 29050768

9

Genome-wide mutagenesis and multi-drug resistance in American trypanosomes induced by the front-line drug benznidazole.

Campos MC, Phelan J, Francisco AF, Taylor MC, Lewis MD, Pain A, Clark TG, Kelly JM. Campos MC, et al. Sci Rep. 2017 Oct 31;7(1):14407. doi: 10.1038/s41598-017-14986-6. Sci Rep. 2017. PMID: 29089615 Free PMC article.

10

Methylation in Mycobacterium tuberculosis is lineage specific with associated mutations present globally.

Phelan J, de Sessions PF, Tientcheu L, Perdigao J, Machado D, Hasan R, Hasan Z, Bergval IL, Anthony R, McNerney R, Antonio M, Portugal I, Viveiros M, Campino S, Hibberd ML, Clark TG. Phelan J, et al. Sci Rep. 2018 Jan 9;8(1):160. doi: 10.1038/s41598-017-18188-y. Sci Rep. 2018. PMID: 29317751 Free PMC article.

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