Phelan J - Search Results

1

COVID-profiler: a webserver for the analysis of SARS-CoV-2 sequencing data.

Phelan J, Deelder W, Ward D, Campino S, Hibberd ML, Clark TG. Phelan J, et al. BMC Bioinformatics. 2022 Apr 15;23(1):137. doi: 10.1186/s12859-022-04632-y. BMC Bioinformatics. 2022. PMID: 35428185 Free PMC article.

2

Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages.

Phelan JE, Coll F, Bergval I, Anthony RM, Warren R, Sampson SL, Gey van Pittius NC, Glynn JR, Crampin AC, Alves A, Bessa TB, Campino S, Dheda K, Grandjean L, Hasan R, Hasan Z, Miranda A, Moore D, Panaiotov S, Perdigao J, Portugal I, Sheen P, de Oliveira Sousa E, Streicher EM, van Helden PD, Viveiros M, Hibberd ML, Pain A, McNerney R, Clark TG. Phelan JE, et al. BMC Genomics. 2016 Feb 29;17:151. doi: 10.1186/s12864-016-2467-y. BMC Genomics. 2016. PMID: 26923687 Free PMC article.

3

Mycobacterium tuberculosis whole genome sequencing and protein structure modelling provides insights into anti-tuberculosis drug resistance.

Phelan J, Coll F, McNerney R, Ascher DB, Pires DE, Furnham N, Coeck N, Hill-Cawthorne GA, Nair MB, Mallard K, Ramsay A, Campino S, Hibberd ML, Pain A, Rigouts L, Clark TG. Phelan J, et al. BMC Med. 2016 Mar 23;14:31. doi: 10.1186/s12916-016-0575-9. BMC Med. 2016. PMID: 27005572 Free PMC article.

4

The draft genome of Mycobacterium aurum, a potential model organism for investigating drugs against Mycobacterium tuberculosis and Mycobacterium leprae.

Phelan J, Maitra A, McNerney R, Nair M, Gupta A, Coll F, Pain A, Bhakta S, Clark TG. Phelan J, et al. Int J Mycobacteriol. 2015 Sep;4(3):207-16. doi: 10.1016/j.ijmyco.2015.05.001. Epub 2015 Jun 4. Int J Mycobacteriol. 2015. PMID: 27649868 Free article.

5

Turkish and Japanese Mycobacterium tuberculosis sublineages share a remote common ancestor.

Refrégier G, Abadia E, Matsumoto T, Ano H, Takashima T, Tsuyuguchi I, Aktas E, Cömert F, Gomgnimbou MK, Panaiotov S, Phelan J, Coll F, McNerney R, Pain A, Clark TG, Sola C. Refrégier G, et al. Among authors: phelan j. Infect Genet Evol. 2016 Nov;45:461-473. doi: 10.1016/j.meegid.2016.10.009. Epub 2016 Oct 14. Infect Genet Evol. 2016. PMID: 27746295

6

The variability and reproducibility of whole genome sequencing technology for detecting resistance to anti-tuberculous drugs.

Phelan J, O'Sullivan DM, Machado D, Ramos J, Whale AS, O'Grady J, Dheda K, Campino S, McNerney R, Viveiros M, Huggett JF, Clark TG. Phelan J, et al. Genome Med. 2016 Dec 22;8(1):132. doi: 10.1186/s13073-016-0385-x. Genome Med. 2016. PMID: 28003022 Free PMC article.

7

Outcomes, infectiousness, and transmission dynamics of patients with extensively drug-resistant tuberculosis and home-discharged patients with programmatically incurable tuberculosis: a prospective cohort study.

Dheda K, Limberis JD, Pietersen E, Phelan J, Esmail A, Lesosky M, Fennelly KP, Te Riele J, Mastrapa B, Streicher EM, Dolby T, Abdallah AM, Ben-Rached F, Simpson J, Smith L, Gumbo T, van Helden P, Sirgel FA, McNerney R, Theron G, Pain A, Clark TG, Warren RM. Dheda K, et al. Among authors: phelan j. Lancet Respir Med. 2017 Apr;5(4):269-281. doi: 10.1016/S2213-2600(16)30433-7. Epub 2017 Jan 19. Lancet Respir Med. 2017. PMID: 28109869 Free article.

8

Primary macrophages and J774 cells respond differently to infection with Mycobacterium tuberculosis.

Andreu N, Phelan J, de Sessions PF, Cliff JM, Clark TG, Hibberd ML. Andreu N, et al. Among authors: phelan j. Sci Rep. 2017 Feb 8;7:42225. doi: 10.1038/srep42225. Sci Rep. 2017. PMID: 28176867 Free PMC article.

9

Pyrazinamide resistance-conferring mutations in pncA and the transmission of multidrug resistant TB in Georgia.

Sengstake S, Bergval IL, Schuitema AR, de Beer JL, Phelan J, de Zwaan R, Clark TG, van Soolingen D, Anthony RM. Sengstake S, et al. Among authors: phelan j. BMC Infect Dis. 2017 Jul 12;17(1):491. doi: 10.1186/s12879-017-2594-3. BMC Infect Dis. 2017. PMID: 28697808 Free PMC article.

10

Single nucleotide polymorphisms in efflux pumps genes in extensively drug resistant Mycobacterium tuberculosis isolates from Pakistan.

Kanji A, Hasan R, Ali A, Zaver A, Zhang Y, Imtiaz K, Shi W, Clark TG, McNerney R, Phelan J, Rao S, Shafiq S, Hasan Z. Kanji A, et al. Among authors: phelan j. Tuberculosis (Edinb). 2017 Dec;107:20-30. doi: 10.1016/j.tube.2017.07.012. Epub 2017 Aug 3. Tuberculosis (Edinb). 2017. PMID: 29050768

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

792 results

Search Page