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Modeling the assembly order of multimeric heteroprotein complexes.
PLoS Comput Biol. 2018 Jan 12;14(1):e1005937. doi: 10.1371/journal.pcbi.1005937. eCollection 2018 Jan.
PLoS Comput Biol. 2018.
PMID: 29329283
Free PMC article.
Performance and enhancement of the LZerD protein assembly pipeline in CAPRI 38-46.
Christoffer C, Terashi G, Shin WH, Aderinwale T, Maddhuri Venkata Subramaniya SR, Peterson L, Verburgt J, Kihara D.
Christoffer C, et al.
Proteins. 2020 Aug;88(8):948-961. doi: 10.1002/prot.25850. Epub 2019 Nov 25.
Proteins. 2020.
PMID: 31697428
Free PMC article.
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Human and server docking prediction for CAPRI round 30-35 using LZerD with combined scoring functions.
Peterson LX, Kim H, Esquivel-Rodriguez J, Roy A, Han X, Shin WH, Zhang J, Terashi G, Lee M, Kihara D.
Peterson LX, et al.
Proteins. 2017 Mar;85(3):513-527. doi: 10.1002/prot.25165. Epub 2016 Oct 14.
Proteins. 2017.
PMID: 27654025
Free PMC article.
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Modeling disordered protein interactions from biophysical principles.
Peterson LX, Roy A, Christoffer C, Terashi G, Kihara D.
Peterson LX, et al.
PLoS Comput Biol. 2017 Apr 10;13(4):e1005485. doi: 10.1371/journal.pcbi.1005485. eCollection 2017 Apr.
PLoS Comput Biol. 2017.
PMID: 28394890
Free PMC article.
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Improved performance in CAPRI round 37 using LZerD docking and template-based modeling with combined scoring functions.
Peterson LX, Shin WH, Kim H, Kihara D.
Peterson LX, et al.
Proteins. 2018 Mar;86 Suppl 1(Suppl 1):311-320. doi: 10.1002/prot.25376. Epub 2017 Sep 11.
Proteins. 2018.
PMID: 28845596
Free PMC article.
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Predicting Real-Valued Protein Residue Fluctuation Using FlexPred.
Peterson L, Jamroz M, Kolinski A, Kihara D.
Peterson L, et al.
Methods Mol Biol. 2017;1484:175-186. doi: 10.1007/978-1-4939-6406-2_13.
Methods Mol Biol. 2017.
PMID: 27787827
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Assessment of protein side-chain conformation prediction methods in different residue environments.
Peterson LX, Kang X, Kihara D.
Peterson LX, et al.
Proteins. 2014 Sep;82(9):1971-84. doi: 10.1002/prot.24552. Epub 2014 Mar 31.
Proteins. 2014.
PMID: 24619909
Free PMC article.
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Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.
Lensink MF, Velankar S, Kryshtafovych A, Huang SY, Schneidman-Duhovny D, Sali A, Segura J, Fernandez-Fuentes N, Viswanath S, Elber R, Grudinin S, Popov P, Neveu E, Lee H, Baek M, Park S, Heo L, Rie Lee G, Seok C, Qin S, Zhou HX, Ritchie DW, Maigret B, Devignes MD, Ghoorah A, Torchala M, Chaleil RA, Bates PA, Ben-Zeev E, Eisenstein M, Negi SS, Weng Z, Vreven T, Pierce BG, Borrman TM, Yu J, Ochsenbein F, Guerois R, Vangone A, Rodrigues JP, van Zundert G, Nellen M, Xue L, Karaca E, Melquiond AS, Visscher K, Kastritis PL, Bonvin AM, Xu X, Qiu L, Yan C, Li J, Ma Z, Cheng J, Zou X, Shen Y, Peterson LX, Kim HR, Roy A, Han X, Esquivel-Rodriguez J, Kihara D, Yu X, Bruce NJ, Fuller JC, Wade RC, Anishchenko I, Kundrotas PJ, Vakser IA, Imai K, Yamada K, Oda T, Nakamura T, Tomii K, Pallara C, Romero-Durana M, Jiménez-García B, Moal IH, Férnandez-Recio J, Joung JY, Kim JY, Joo K, Lee J, Kozakov D, Vajda S, Mottarella S, Hall DR, Beglov D, Mamonov A, Xia B, Bohnuud T, Del Carpio CA, Ichiishi E, Marze N, Kuroda D, Roy Burman SS, Gray JJ, Chermak E, Cavallo L, Oliva R, Tovchigrechko A, Wodak SJ.
Lensink MF, et al. Among authors: peterson lx.
Proteins. 2016 Sep;84 Suppl 1(Suppl Suppl 1):323-48. doi: 10.1002/prot.25007. Epub 2016 Jun 1.
Proteins. 2016.
PMID: 27122118
Free PMC article.
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