Peters B - Search Results

1

BepiPred-3.0: Improved B-cell epitope prediction using protein language models.

Clifford JN, Høie MH, Deleuran S, Peters B, Nielsen M, Marcatili P. Clifford JN, et al. Among authors: peters b. Protein Sci. 2022 Dec;31(12):e4497. doi: 10.1002/pro.4497. Protein Sci. 2022. PMID: 36366745 Free PMC article.

2

A consensus epitope prediction approach identifies the breadth of murine T(CD8+)-cell responses to vaccinia virus.

Moutaftsi M, Peters B, Pasquetto V, Tscharke DC, Sidney J, Bui HH, Grey H, Sette A. Moutaftsi M, et al. Among authors: peters b. Nat Biotechnol. 2006 Jul;24(7):817-9. doi: 10.1038/nbt1215. Epub 2006 Jun 11. Nat Biotechnol. 2006. PMID: 16767078

3

NetMHCpan, a method for quantitative predictions of peptide binding to any HLA-A and -B locus protein of known sequence.

Nielsen M, Lundegaard C, Blicher T, Lamberth K, Harndahl M, Justesen S, Røder G, Peters B, Sette A, Lund O, Buus S. Nielsen M, et al. Among authors: peters b. PLoS One. 2007 Aug 29;2(8):e796. doi: 10.1371/journal.pone.0000796. PLoS One. 2007. PMID: 17726526 Free PMC article.

4

Immune epitope database analysis resource (IEDB-AR).

Zhang Q, Wang P, Kim Y, Haste-Andersen P, Beaver J, Bourne PE, Bui HH, Buus S, Frankild S, Greenbaum J, Lund O, Lundegaard C, Nielsen M, Ponomarenko J, Sette A, Zhu Z, Peters B. Zhang Q, et al. Among authors: peters b. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W513-8. doi: 10.1093/nar/gkn254. Epub 2008 May 31. Nucleic Acids Res. 2008. PMID: 18515843 Free PMC article.

5

Quantitative predictions of peptide binding to any HLA-DR molecule of known sequence: NetMHCIIpan.

Nielsen M, Lundegaard C, Blicher T, Peters B, Sette A, Justesen S, Buus S, Lund O. Nielsen M, et al. Among authors: peters b. PLoS Comput Biol. 2008 Jul 4;4(7):e1000107. doi: 10.1371/journal.pcbi.1000107. PLoS Comput Biol. 2008. PMID: 18604266 Free PMC article.

6

NetMHCpan, a method for MHC class I binding prediction beyond humans.

Hoof I, Peters B, Sidney J, Pedersen LE, Sette A, Lund O, Buus S, Nielsen M. Hoof I, et al. Among authors: peters b. Immunogenetics. 2009 Jan;61(1):1-13. doi: 10.1007/s00251-008-0341-z. Epub 2008 Nov 12. Immunogenetics. 2009. PMID: 19002680 Free PMC article.

7

Limitations of Ab initio predictions of peptide binding to MHC class II molecules.

Zhang H, Wang P, Papangelopoulos N, Xu Y, Sette A, Bourne PE, Lund O, Ponomarenko J, Nielsen M, Peters B. Zhang H, et al. Among authors: peters b. PLoS One. 2010 Feb 17;5(2):e9272. doi: 10.1371/journal.pone.0009272. PLoS One. 2010. PMID: 20174654 Free PMC article.

8

Peptide binding predictions for HLA DR, DP and DQ molecules.

Wang P, Sidney J, Kim Y, Sette A, Lund O, Nielsen M, Peters B. Wang P, et al. Among authors: peters b. BMC Bioinformatics. 2010 Nov 22;11:568. doi: 10.1186/1471-2105-11-568. BMC Bioinformatics. 2010. PMID: 21092157 Free PMC article.

9

Immune epitope database analysis resource.

Kim Y, Ponomarenko J, Zhu Z, Tamang D, Wang P, Greenbaum J, Lundegaard C, Sette A, Lund O, Bourne PE, Nielsen M, Peters B. Kim Y, et al. Among authors: peters b. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W525-30. doi: 10.1093/nar/gks438. Epub 2012 May 18. Nucleic Acids Res. 2012. PMID: 22610854 Free PMC article.

10

Dataset size and composition impact the reliability of performance benchmarks for peptide-MHC binding predictions.

Kim Y, Sidney J, Buus S, Sette A, Nielsen M, Peters B. Kim Y, et al. Among authors: peters b. BMC Bioinformatics. 2014 Jul 14;15(1):241. doi: 10.1186/1471-2105-15-241. BMC Bioinformatics. 2014. PMID: 25017736 Free PMC article.

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