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Functional Integration of mRNA Translational Control Programs.
MacNicol MC, Cragle CE, Arumugam K, Fosso B, Pesole G, MacNicol AM. MacNicol MC, et al. Among authors: pesole g. Biomolecules. 2015 Jul 21;5(3):1580-99. doi: 10.3390/biom5031580. Biomolecules. 2015. PMID: 26197342 Free PMC article. Review.
Reference databases for taxonomic assignment in metagenomics.
Santamaria M, Fosso B, Consiglio A, De Caro G, Grillo G, Licciulli F, Liuni S, Marzano M, Alonso-Alemany D, Valiente G, Pesole G. Santamaria M, et al. Among authors: pesole g. Brief Bioinform. 2012 Nov;13(6):682-95. doi: 10.1093/bib/bbs036. Epub 2012 Jul 10. Brief Bioinform. 2012. PMID: 22786784 Review.
BALB/c and C57BL/6 Mice Differ in Polyreactive IgA Abundance, which Impacts the Generation of Antigen-Specific IgA and Microbiota Diversity.
Fransen F, Zagato E, Mazzini E, Fosso B, Manzari C, El Aidy S, Chiavelli A, D'Erchia AM, Sethi MK, Pabst O, Marzano M, Moretti S, Romani L, Penna G, Pesole G, Rescigno M. Fransen F, et al. Among authors: pesole g. Immunity. 2015 Sep 15;43(3):527-40. doi: 10.1016/j.immuni.2015.08.011. Epub 2015 Sep 8. Immunity. 2015. PMID: 26362264 Free article.
Intestinal microbiota sustains inflammation and autoimmunity induced by hypomorphic RAG defects.
Rigoni R, Fontana E, Guglielmetti S, Fosso B, D'Erchia AM, Maina V, Taverniti V, Castiello MC, Mantero S, Pacchiana G, Musio S, Pedotti R, Selmi C, Mora JR, Pesole G, Vezzoni P, Poliani PL, Grassi F, Villa A, Cassani B. Rigoni R, et al. Among authors: pesole g. J Exp Med. 2016 Mar 7;213(3):355-75. doi: 10.1084/jem.20151116. Epub 2016 Feb 29. J Exp Med. 2016. PMID: 26926994 Free PMC article.
Complexity and Dynamics of the Winemaking Bacterial Communities in Berries, Musts, and Wines from Apulian Grape Cultivars through Time and Space.
Marzano M, Fosso B, Manzari C, Grieco F, Intranuovo M, Cozzi G, Mulè G, Scioscia G, Valiente G, Tullo A, Sbisà E, Pesole G, Santamaria M. Marzano M, et al. Among authors: pesole g. PLoS One. 2016 Jun 14;11(6):e0157383. doi: 10.1371/journal.pone.0157383. eCollection 2016. PLoS One. 2016. PMID: 27299312 Free PMC article.
MetaShot: an accurate workflow for taxon classification of host-associated microbiome from shotgun metagenomic data.
Fosso B, Santamaria M, D'Antonio M, Lovero D, Corrado G, Vizza E, Passaro N, Garbuglia AR, Capobianchi MR, Crescenzi M, Valiente G, Pesole G. Fosso B, et al. Among authors: pesole g. Bioinformatics. 2017 Jun 1;33(11):1730-1732. doi: 10.1093/bioinformatics/btx036. Bioinformatics. 2017. PMID: 28130230 Free PMC article.
However, the analysis of such sequencing data is still extremely challenging in terms of both overall accuracy and computational efficiency, and current methodologies show substantial variability in misclassification rate and resolution at lower taxonomic ranks or are limited to …
However, the analysis of such sequencing data is still extremely challenging in terms of both overall accuracy and computational efficiency, …
T Follicular Helper Cells Promote a Beneficial Gut Ecosystem for Host Metabolic Homeostasis by Sensing Microbiota-Derived Extracellular ATP.
Perruzza L, Gargari G, Proietti M, Fosso B, D'Erchia AM, Faliti CE, Rezzonico-Jost T, Scribano D, Mauri L, Colombo D, Pellegrini G, Moregola A, Mooser C, Pesole G, Nicoletti M, Norata GD, Geuking MB, McCoy KD, Guglielmetti S, Grassi F. Perruzza L, et al. Among authors: pesole g. Cell Rep. 2017 Mar 14;18(11):2566-2575. doi: 10.1016/j.celrep.2017.02.061. Cell Rep. 2017. PMID: 28297661 Free PMC article.
The metagenomic data life-cycle: standards and best practices.
Ten Hoopen P, Finn RD, Bongo LA, Corre E, Fosso B, Meyer F, Mitchell A, Pelletier E, Pesole G, Santamaria M, Willassen NP, Cochrane G. Ten Hoopen P, et al. Among authors: pesole g. Gigascience. 2017 Aug 1;6(8):1-11. doi: 10.1093/gigascience/gix047. Gigascience. 2017. PMID: 28637310 Free PMC article.
Unbiased Taxonomic Annotation of Metagenomic Samples.
Fosso B, Pesole G, Rosselló F, Valiente G. Fosso B, et al. Among authors: pesole g. J Comput Biol. 2018 Mar;25(3):348-360. doi: 10.1089/cmb.2017.0144. Epub 2017 Oct 13. J Comput Biol. 2018. PMID: 29028181 Free PMC article.
346 results