Pereira-Leal JB - Search Results

1

Classification schemes for protein structure and function.

Ouzounis CA, Coulson RM, Enright AJ, Kunin V, Pereira-Leal JB. Ouzounis CA, et al. Nat Rev Genet. 2003 Jul;4(7):508-19. doi: 10.1038/nrg1113. Nat Rev Genet. 2003. PMID: 12838343 Review.

2

Detection of functional modules from protein interaction networks.

Pereira-Leal JB, Enright AJ, Ouzounis CA. Pereira-Leal JB, et al. Proteins. 2004 Jan 1;54(1):49-57. doi: 10.1002/prot.10505. Proteins. 2004. PMID: 14705023

3

Functional evolution of the yeast protein interaction network.

Kunin V, Pereira-Leal JB, Ouzounis CA. Kunin V, et al. Mol Biol Evol. 2004 Jul;21(7):1171-6. doi: 10.1093/molbev/msh085. Epub 2004 Apr 7. Mol Biol Evol. 2004. PMID: 15071090

4

An exponential core in the heart of the yeast protein interaction network.

Pereira-Leal JB, Audit B, Peregrin-Alvarez JM, Ouzounis CA. Pereira-Leal JB, et al. Mol Biol Evol. 2005 Mar;22(3):421-5. doi: 10.1093/molbev/msi024. Epub 2004 Oct 20. Mol Biol Evol. 2005. PMID: 15496552

5

Beyond 100 genomes.

Janssen P, Audit B, Cases I, Darzentas N, Goldovsky L, Kunin V, Lopez-Bigas N, Peregrin-Alvarez JM, Pereira-Leal JB, Tsoka S, Ouzounis CA. Janssen P, et al. Genome Biol. 2003;4(5):402. doi: 10.1186/gb-2003-4-5-402. Epub 2003 Apr 28. Genome Biol. 2003. PMID: 12734008 Free PMC article.

6

Genome evolution reveals biochemical networks and functional modules.

von Mering C, Zdobnov EM, Tsoka S, Ciccarelli FD, Pereira-Leal JB, Ouzounis CA, Bork P. von Mering C, et al. Proc Natl Acad Sci U S A. 2003 Dec 23;100(26):15428-33. doi: 10.1073/pnas.2136809100. Epub 2003 Dec 12. Proc Natl Acad Sci U S A. 2003. PMID: 14673105 Free PMC article.

7

3D complex: a structural classification of protein complexes.

Levy ED, Pereira-Leal JB, Chothia C, Teichmann SA. Levy ED, et al. PLoS Comput Biol. 2006 Nov 17;2(11):e155. doi: 10.1371/journal.pcbi.0020155. Epub 2006 Oct 5. PLoS Comput Biol. 2006. PMID: 17112313 Free PMC article.

8

Evolution and dynamics of protein interactions and networks.

Levy ED, Pereira-Leal JB. Levy ED, et al. Curr Opin Struct Biol. 2008 Jun;18(3):349-57. doi: 10.1016/j.sbi.2008.03.003. Epub 2008 Apr 28. Curr Opin Struct Biol. 2008. PMID: 18448325 Review.

9

Novel specificities emerge by stepwise duplication of functional modules.

Pereira-Leal JB, Teichmann SA. Pereira-Leal JB, et al. Genome Res. 2005 Apr;15(4):552-9. doi: 10.1101/gr.3102105. Genome Res. 2005. PMID: 15805495 Free PMC article.

10

Evolution of the Rab family of small GTP-binding proteins.

Pereira-Leal JB, Seabra MC. Pereira-Leal JB, et al. J Mol Biol. 2001 Nov 2;313(4):889-901. doi: 10.1006/jmbi.2001.5072. J Mol Biol. 2001. PMID: 11697911

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