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In situ analysis of osmolyte mechanisms of proteome thermal stabilization.
Pepelnjak M, Velten B, Näpflin N, von Rosen T, Palmiero UC, Ko JH, Maynard HD, Arosio P, Weber-Ban E, de Souza N, Huber W, Picotti P. Pepelnjak M, et al. Nat Chem Biol. 2024 Feb 29. doi: 10.1038/s41589-024-01568-7. Online ahead of print. Nat Chem Biol. 2024. PMID: 38424171
Systematic identification of 20S proteasome substrates.
Pepelnjak M, Rogawski R, Arkind G, Leushkin Y, Fainer I, Ben-Nissan G, Picotti P, Sharon M. Pepelnjak M, et al. Mol Syst Biol. 2024 Apr;20(4):403-427. doi: 10.1038/s44320-024-00015-y. Epub 2024 Jan 29. Mol Syst Biol. 2024. PMID: 38287148 Free PMC article.
Author Correction: Proteome-wide structural changes measured with limited proteolysis-mass spectrometry: an advanced protocol for high-throughput applications.
Malinovska L, Cappelletti V, Kohler D, Piazza I, Tsai TH, Pepelnjak M, Stalder P, Dörig C, Sesterhenn F, Elsässer F, Kralickova L, Beaton N, Reiter L, de Souza N, Vitek O, Picotti P. Malinovska L, et al. Among authors: pepelnjak m. Nat Protoc. 2023 Jun;18(6):1979. doi: 10.1038/s41596-023-00808-9. Nat Protoc. 2023. PMID: 36653529 No abstract available.
Proteome-wide structural changes measured with limited proteolysis-mass spectrometry: an advanced protocol for high-throughput applications.
Malinovska L, Cappelletti V, Kohler D, Piazza I, Tsai TH, Pepelnjak M, Stalder P, Dörig C, Sesterhenn F, Elsässer F, Kralickova L, Beaton N, Reiter L, de Souza N, Vitek O, Picotti P. Malinovska L, et al. Among authors: pepelnjak m. Nat Protoc. 2023 Mar;18(3):659-682. doi: 10.1038/s41596-022-00771-x. Epub 2022 Dec 16. Nat Protoc. 2023. PMID: 36526727 Review.
Dynamic 3D proteomes reveal protein functional alterations at high resolution in situ.
Cappelletti V, Hauser T, Piazza I, Pepelnjak M, Malinovska L, Fuhrer T, Li Y, Dörig C, Boersema P, Gillet L, Grossbach J, Dugourd A, Saez-Rodriguez J, Beyer A, Zamboni N, Caflisch A, de Souza N, Picotti P. Cappelletti V, et al. Among authors: pepelnjak m. Cell. 2021 Jan 21;184(2):545-559.e22. doi: 10.1016/j.cell.2020.12.021. Epub 2020 Dec 23. Cell. 2021. PMID: 33357446 Free PMC article.