Penzar DD - Search Results

1

Integration of multiple epigenomic marks improves prediction of variant impact in saturation mutagenesis reporter assay.

Shigaki D, Adato O, Adhikari AN, Dong S, Hawkins-Hooker A, Inoue F, Juven-Gershon T, Kenlay H, Martin B, Patra A, Penzar DD, Schubach M, Xiong C, Yan Z, Boyle AP, Kreimer A, Kulakovskiy IV, Reid J, Unger R, Yosef N, Shendure J, Ahituv N, Kircher M, Beer MA. Shigaki D, et al. Among authors: penzar dd. Hum Mutat. 2019 Sep;40(9):1280-1291. doi: 10.1002/humu.23797. Epub 2019 Jun 23. Hum Mutat. 2019. PMID: 31106481 Free PMC article.

2

What Do Neighbors Tell About You: The Local Context of Cis-Regulatory Modules Complicates Prediction of Regulatory Variants.

Penzar DD, Zinkevich AO, Vorontsov IE, Sitnik VV, Favorov AV, Makeev VJ, Kulakovskiy IV. Penzar DD, et al. Front Genet. 2019 Oct 31;10:1078. doi: 10.3389/fgene.2019.01078. eCollection 2019. Front Genet. 2019. PMID: 31737053 Free PMC article.

3

Landscape of allele-specific transcription factor binding in the human genome.

Abramov S, Boytsov A, Bykova D, Penzar DD, Yevshin I, Kolmykov SK, Fridman MV, Favorov AV, Vorontsov IE, Baulin E, Kolpakov F, Makeev VJ, Kulakovskiy IV. Abramov S, et al. Among authors: penzar dd. Nat Commun. 2021 May 12;12(1):2751. doi: 10.1038/s41467-021-23007-0. Nat Commun. 2021. PMID: 33980847 Free PMC article.

4

Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study.

Ambrosini G, Vorontsov I, Penzar D, Groux R, Fornes O, Nikolaeva DD, Ballester B, Grau J, Grosse I, Makeev V, Kulakovskiy I, Bucher P. Ambrosini G, et al. Among authors: penzar d. Genome Biol. 2020 May 11;21(1):114. doi: 10.1186/s13059-020-01996-3. Genome Biol. 2020. PMID: 32393327 Free PMC article.

5

H3K4me3, H3K9ac, H3K27ac, H3K27me3 and H3K9me3 Histone Tags Suggest Distinct Regulatory Evolution of Open and Condensed Chromatin Landmarks.

Igolkina AA, Zinkevich A, Karandasheva KO, Popov AA, Selifanova MV, Nikolaeva D, Tkachev V, Penzar D, Nikitin DM, Buzdin A. Igolkina AA, et al. Cells. 2019 Sep 5;8(9):1034. doi: 10.3390/cells8091034. Cells. 2019. PMID: 31491936 Free PMC article.

6

Profiling of Human Molecular Pathways Affected by Retrotransposons at the Level of Regulation by Transcription Factor Proteins.

Nikitin D, Penzar D, Garazha A, Sorokin M, Tkachev V, Borisov N, Poltorak A, Prassolov V, Buzdin AA. Nikitin D, et al. Front Immunol. 2018 Jan 30;9:30. doi: 10.3389/fimmu.2018.00030. eCollection 2018. Front Immunol. 2018. PMID: 29441061 Free PMC article.

7

Retroelement-Linked Transcription Factor Binding Patterns Point to Quickly Developing Molecular Pathways in Human Evolution.

Nikitin D, Garazha A, Sorokin M, Penzar D, Tkachev V, Markov A, Gaifullin N, Borger P, Poltorak A, Buzdin A. Nikitin D, et al. Cells. 2019 Feb 6;8(2):130. doi: 10.3390/cells8020130. Cells. 2019. PMID: 30736359 Free PMC article.

8

Investigation of the Role of PUFA Metabolism in Breast Cancer Using a Rank-Based Random Forest Algorithm.

Guryleva MV, Penzar DD, Chistyakov DV, Mironov AA, Favorov AV, Sergeeva MG. Guryleva MV, et al. Among authors: penzar dd. Cancers (Basel). 2022 Sep 25;14(19):4663. doi: 10.3390/cancers14194663. Cancers (Basel). 2022. PMID: 36230586 Free PMC article.

9

Correction: Nikitin, D., et al. Retroelement-Linked Transcription Factor Binding Patterns Point to Quickly Developing Molecular Pathways in Human Evolution. Cells 2019, 8, 130.

Nikitin D, Garazha A, Sorokin M, Penzar D, Tkachev V, Markov A, Gaifullin N, Borger P, Poltorak A, Buzdin A. Nikitin D, et al. Cells. 2019 Aug 5;8(8):832. doi: 10.3390/cells8080832. Cells. 2019. PMID: 31387291 Free PMC article.

10

PQ, a new program for phylogeny reconstruction.

Penzar D, Krivozubov M, Spirin S. Penzar D, et al. BMC Bioinformatics. 2018 Oct 12;19(1):374. doi: 10.1186/s12859-018-2399-4. BMC Bioinformatics. 2018. PMID: 30314446 Free PMC article.

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