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Long-read metagenomics of soil communities reveals phylum-specific secondary metabolite dynamics.
Van Goethem MW, Osborn AR, Bowen BP, Andeer PF, Swenson TL, Clum A, Riley R, He G, Koriabine M, Sandor L, Yan M, Daum CG, Yoshinaga Y, Makhalanyane TP, Garcia-Pichel F, Visel A, Pennacchio LA, O'Malley RC, Northen TR. Van Goethem MW, et al. Among authors: pennacchio la. Commun Biol. 2021 Nov 18;4(1):1302. doi: 10.1038/s42003-021-02809-4. Commun Biol. 2021. PMID: 34795375 Free PMC article.
VISTA Enhancer Browser--a database of tissue-specific human enhancers.
Visel A, Minovitsky S, Dubchak I, Pennacchio LA. Visel A, et al. Among authors: pennacchio la. Nucleic Acids Res. 2007 Jan;35(Database issue):D88-92. doi: 10.1093/nar/gkl822. Epub 2006 Nov 27. Nucleic Acids Res. 2007. PMID: 17130149 Free PMC article.
Enhancer identification through comparative genomics.
Visel A, Bristow J, Pennacchio LA. Visel A, et al. Among authors: pennacchio la. Semin Cell Dev Biol. 2007 Feb;18(1):140-52. doi: 10.1016/j.semcdb.2006.12.014. Epub 2007 Jan 5. Semin Cell Dev Biol. 2007. PMID: 17276707 Free PMC article. Review.
Deletion of ultraconserved elements yields viable mice.
Ahituv N, Zhu Y, Visel A, Holt A, Afzal V, Pennacchio LA, Rubin EM. Ahituv N, et al. Among authors: pennacchio la. PLoS Biol. 2007 Sep;5(9):e234. doi: 10.1371/journal.pbio.0050234. PLoS Biol. 2007. PMID: 17803355 Free PMC article.
Human-specific gain of function in a developmental enhancer.
Prabhakar S, Visel A, Akiyama JA, Shoukry M, Lewis KD, Holt A, Plajzer-Frick I, Morrison H, Fitzpatrick DR, Afzal V, Pennacchio LA, Rubin EM, Noonan JP. Prabhakar S, et al. Among authors: pennacchio la. Science. 2008 Sep 5;321(5894):1346-50. doi: 10.1126/science.1159974. Science. 2008. PMID: 18772437 Free PMC article.
ChIP-seq accurately predicts tissue-specific activity of enhancers.
Visel A, Blow MJ, Li Z, Zhang T, Akiyama JA, Holt A, Plajzer-Frick I, Shoukry M, Wright C, Chen F, Afzal V, Ren B, Rubin EM, Pennacchio LA. Visel A, et al. Among authors: pennacchio la. Nature. 2009 Feb 12;457(7231):854-8. doi: 10.1038/nature07730. Nature. 2009. PMID: 19212405 Free PMC article.
Functional autonomy of distant-acting human enhancers.
Visel A, Akiyama JA, Shoukry M, Afzal V, Rubin EM, Pennacchio LA. Visel A, et al. Among authors: pennacchio la. Genomics. 2009 Jun;93(6):509-13. doi: 10.1016/j.ygeno.2009.02.002. Epub 2009 Mar 5. Genomics. 2009. PMID: 19268701 Free PMC article.
Genomic views of distant-acting enhancers.
Visel A, Rubin EM, Pennacchio LA. Visel A, et al. Among authors: pennacchio la. Nature. 2009 Sep 10;461(7261):199-205. doi: 10.1038/nature08451. Nature. 2009. PMID: 19741700 Free PMC article. Review.
187 results