Pellow D - Search Results

1

Plasmids in the human gut reveal neutral dispersal and recombination that is overpowered by inflammatory diseases.

Zorea A, Pellow D, Levin L, Pilosof S, Friedman J, Shamir R, Mizrahi I. Zorea A, et al. Among authors: pellow d. Nat Commun. 2024 Apr 11;15(1):3147. doi: 10.1038/s41467-024-47272-x. Nat Commun. 2024. PMID: 38605009 Free PMC article.

2

Efficient minimizer orders for large values of k using minimum decycling sets.

Pellow D, Pu L, Ekim B, Kotlar L, Berger B, Shamir R, Orenstein Y. Pellow D, et al. Genome Res. 2023 Jul;33(7):1154-1161. doi: 10.1101/gr.277644.123. Epub 2023 Aug 9. Genome Res. 2023. PMID: 37558282 Free PMC article.

3

Parameterized syncmer schemes improve long-read mapping.

Dutta A, Pellow D, Shamir R. Dutta A, et al. Among authors: pellow d. PLoS Comput Biol. 2022 Oct 28;18(10):e1010638. doi: 10.1371/journal.pcbi.1010638. eCollection 2022 Oct. PLoS Comput Biol. 2022. PMID: 36306319 Free PMC article.

4

The Human Right to Water: A 20-Year Comparative Analysis of Arsenic in Rural and Carceral Drinking Water Systems in California.

Rempel J, Ray I, Hessl E, Vazin J, Zhou Z, Kim S, Zhang X, Ding C, He Z, Pellow D, Cohen A. Rempel J, et al. Among authors: pellow d. Environ Health Perspect. 2022 Sep;130(9):97701. doi: 10.1289/EHP10758. Epub 2022 Sep 21. Environ Health Perspect. 2022. PMID: 36129293 Free PMC article. No abstract available.

5

Data Set-Adaptive Minimizer Order Reduces Memory Usage in k-Mer Counting.

Flomin D, Pellow D, Shamir R. Flomin D, et al. Among authors: pellow d. J Comput Biol. 2022 Aug;29(8):825-838. doi: 10.1089/cmb.2021.0599. Epub 2022 May 6. J Comput Biol. 2022. PMID: 35527644

6

SCAPP: an algorithm for improved plasmid assembly in metagenomes.

Pellow D, Zorea A, Probst M, Furman O, Segal A, Mizrahi I, Shamir R. Pellow D, et al. Microbiome. 2021 Jun 25;9(1):144. doi: 10.1186/s40168-021-01068-z. Microbiome. 2021. PMID: 34172093 Free PMC article.

7

PlasClass improves plasmid sequence classification.

Pellow D, Mizrahi I, Shamir R. Pellow D, et al. PLoS Comput Biol. 2020 Apr 3;16(4):e1007781. doi: 10.1371/journal.pcbi.1007781. eCollection 2020 Apr. PLoS Comput Biol. 2020. PMID: 32243433 Free PMC article.

8

Designing small universal k-mer hitting sets for improved analysis of high-throughput sequencing.

Orenstein Y, Pellow D, Marçais G, Shamir R, Kingsford C. Orenstein Y, et al. Among authors: pellow d. PLoS Comput Biol. 2017 Oct 2;13(10):e1005777. doi: 10.1371/journal.pcbi.1005777. eCollection 2017 Oct. PLoS Comput Biol. 2017. PMID: 28968408 Free PMC article.

9

Improving the performance of minimizers and winnowing schemes.

Marçais G, Pellow D, Bork D, Orenstein Y, Shamir R, Kingsford C. Marçais G, et al. Among authors: pellow d. Bioinformatics. 2017 Jul 15;33(14):i110-i117. doi: 10.1093/bioinformatics/btx235. Bioinformatics. 2017. PMID: 28881970 Free PMC article.

10

Improving Bloom Filter Performance on Sequence Data Using k-mer Bloom Filters.

Pellow D, Filippova D, Kingsford C. Pellow D, et al. J Comput Biol. 2017 Jun;24(6):547-557. doi: 10.1089/cmb.2016.0155. Epub 2016 Nov 9. J Comput Biol. 2017. PMID: 27828710 Free PMC article.

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