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drexml: A command line tool and Python package for drug repurposing.
Esteban-Medina M, de la Oliva Roque VM, Herráiz-Gil S, Peña-Chilet M, Dopazo J, Loucera C. Esteban-Medina M, et al. Among authors: pena chilet m. Comput Struct Biotechnol J. 2024 Mar 1;23:1129-1143. doi: 10.1016/j.csbj.2024.02.027. eCollection 2024 Dec. Comput Struct Biotechnol J. 2024. PMID: 38510973 Free PMC article.
Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches.
Niarakis A, Ostaszewski M, Mazein A, Kuperstein I, Kutmon M, Gillespie ME, Funahashi A, Acencio ML, Hemedan A, Aichem M, Klein K, Czauderna T, Burtscher F, Yamada TG, Hiki Y, Hiroi NF, Hu F, Pham N, Ehrhart F, Willighagen EL, Valdeolivas A, Dugourd A, Messina F, Esteban-Medina M, Peña-Chilet M, Rian K, Soliman S, Aghamiri SS, Puniya BL, Naldi A, Helikar T, Singh V, Fernández MF, Bermudez V, Tsirvouli E, Montagud A, Noël V, Ponce-de-Leon M, Maier D, Bauch A, Gyori BM, Bachman JA, Luna A, Piñero J, Furlong LI, Balaur I, Rougny A, Jarosz Y, Overall RW, Phair R, Perfetto L, Matthews L, Rex DAB, Orlic-Milacic M, Gomez LCM, De Meulder B, Ravel JM, Jassal B, Satagopam V, Wu G, Golebiewski M, Gawron P, Calzone L, Beckmann JS, Evelo CT, D'Eustachio P, Schreiber F, Saez-Rodriguez J, Dopazo J, Kuiper M, Valencia A, Wolkenhauer O, Kitano H, Barillot E, Auffray C, Balling R, Schneider R; COVID-19 Disease Map Community. Niarakis A, et al. Among authors: pena chilet m. Front Immunol. 2024 Feb 13;14:1282859. doi: 10.3389/fimmu.2023.1282859. eCollection 2023. Front Immunol. 2024. PMID: 38414974 Free PMC article.
Functional Profiling of Soft Tissue Sarcoma Using Mechanistic Models.
Payá-Milans M, Peña-Chilet M, Loucera C, Esteban-Medina M, Dopazo J. Payá-Milans M, et al. Among authors: pena chilet m. Int J Mol Sci. 2023 Sep 29;24(19):14732. doi: 10.3390/ijms241914732. Int J Mol Sci. 2023. PMID: 37834179 Free PMC article.
Visualization of automatically combined disease maps and pathway diagrams for rare diseases.
Gawron P, Hoksza D, Piñero J, Peña-Chilet M, Esteban-Medina M, Fernandez-Rueda JL, Colonna V, Smula E, Heirendt L, Ancien F, Groues V, Satagopam VP, Schneider R, Dopazo J, Furlong LI, Ostaszewski M. Gawron P, et al. Among authors: pena chilet m. Front Bioinform. 2023 Jul 12;3:1101505. doi: 10.3389/fbinf.2023.1101505. eCollection 2023. Front Bioinform. 2023. PMID: 37502697 Free PMC article.
microRNAs-mediated regulation of insulin signaling in white adipose tissue during aging: Role of caloric restriction.
Corrales P, Martin-Taboada M, Vivas-García Y, Torres L, Ramirez-Jimenez L, Lopez Y, Horrillo D, Vila-Bedmar R, Barber-Cano E, Izquierdo-Lahuerta A, Peña-Chilet M, Martínez C, Dopazo J, Ros M, Medina-Gomez G. Corrales P, et al. Among authors: pena chilet m. Aging Cell. 2023 Nov;22(11):e13919. doi: 10.1111/acel.13919. Epub 2023 Jul 4. Aging Cell. 2023. PMID: 37403257 Free PMC article.
A crowdsourcing database for the copy-number variation of the Spanish population.
López-López D, Roldán G, Fernández-Rueda JL, Bostelmann G, Carmona R, Aquino V, Perez-Florido J, Ortuño F, Pita G, Núñez-Torres R, González-Neira A; CSVS Crowdsourcing Group; Peña-Chilet M, Dopazo J. López-López D, et al. Among authors: pena chilet m. Hum Genomics. 2023 Mar 9;17(1):20. doi: 10.1186/s40246-023-00466-8. Hum Genomics. 2023. PMID: 36894999 Free PMC article.
55 results