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The impact of sequencing depth and relatedness of the reference genome in population genomic studies: A case study with two caddisfly species (Trichoptera, Rhyacophilidae, Himalopsyche).
Deng XL, Frandsen PB, Dikow RB, Favre A, Shah DN, Shah RDT, Schneider JV, Heckenhauer J, Pauls SU. Deng XL, et al. Among authors: pauls su. Ecol Evol. 2022 Dec 12;12(12):e9583. doi: 10.1002/ece3.9583. eCollection 2022 Dec. Ecol Evol. 2022. PMID: 36523526 Free PMC article.
The Trichoptera barcode initiative: a strategy for generating a species-level Tree of Life.
Zhou X, Frandsen PB, Holzenthal RW, Beet CR, Bennett KR, Blahnik RJ, Bonada N, Cartwright D, Chuluunbat S, Cocks GV, Collins GE, deWaard J, Dean J, Flint OS Jr, Hausmann A, Hendrich L, Hess M, Hogg ID, Kondratieff BC, Malicky H, Milton MA, Morinière J, Morse JC, Mwangi FN, Pauls SU, Gonzalez MR, Rinne A, Robinson JL, Salokannel J, Shackleton M, Smith B, Stamatakis A, StClair R, Thomas JA, Zamora-Muñoz C, Ziesmann T, Kjer KM. Zhou X, et al. Among authors: pauls su. Philos Trans R Soc Lond B Biol Sci. 2016 Sep 5;371(1702):20160025. doi: 10.1098/rstb.2016.0025. Philos Trans R Soc Lond B Biol Sci. 2016. PMID: 27481793 Free PMC article.
Draft Genome Assemblies and Annotations of Agrypnia vestita Walker, and Hesperophylax magnus Banks Reveal Substantial Repetitive Element Expansion in Tube Case-Making Caddisflies (Insecta: Trichoptera).
Olsen LK, Heckenhauer J, Sproul JS, Dikow RB, Gonzalez VL, Kweskin MP, Taylor AM, Wilson SB, Stewart RJ, Zhou X, Holzenthal R, Pauls SU, Frandsen PB. Olsen LK, et al. Among authors: pauls su. Genome Biol Evol. 2021 Mar 1;13(3):evab013. doi: 10.1093/gbe/evab013. Genome Biol Evol. 2021. PMID: 33501983 Free PMC article.
Long Reads Are Revolutionizing 20 Years of Insect Genome Sequencing.
Hotaling S, Sproul JS, Heckenhauer J, Powell A, Larracuente AM, Pauls SU, Kelley JL, Frandsen PB. Hotaling S, et al. Among authors: pauls su. Genome Biol Evol. 2021 Aug 3;13(8):evab138. doi: 10.1093/gbe/evab138. Genome Biol Evol. 2021. PMID: 34152413 Free PMC article.
A global agenda for advancing freshwater biodiversity research.
Maasri A, Jähnig SC, Adamescu MC, Adrian R, Baigun C, Baird DJ, Batista-Morales A, Bonada N, Brown LE, Cai Q, Campos-Silva JV, Clausnitzer V, Contreras-MacBeath T, Cooke SJ, Datry T, Delacámara G, De Meester L, Dijkstra KB, Do VT, Domisch S, Dudgeon D, Erös T, Freitag H, Freyhof J, Friedrich J, Friedrichs-Manthey M, Geist J, Gessner MO, Goethals P, Gollock M, Gordon C, Grossart HP, Gulemvuga G, Gutiérrez-Fonseca PE, Haase P, Hering D, Hahn HJ, Hawkins CP, He F, Heino J, Hermoso V, Hogan Z, Hölker F, Jeschke JM, Jiang M, Johnson RK, Kalinkat G, Karimov BK, Kasangaki A, Kimirei IA, Kohlmann B, Kuemmerlen M, Kuiper JJ, Kupilas B, Langhans SD, Lansdown R, Leese F, Magbanua FS, Matsuzaki SS, Monaghan MT, Mumladze L, Muzon J, Mvogo Ndongo PA, Nejstgaard JC, Nikitina O, Ochs C, Odume ON, Opperman JJ, Patricio H, Pauls SU, Raghavan R, Ramírez A, Rashni B, Ross-Gillespie V, Samways MJ, Schäfer RB, Schmidt-Kloiber A, Seehausen O, Shah DN, Sharma S, Soininen J, Sommerwerk N, Stockwell JD, Suhling F, Tachamo Shah RD, Tharme RE, Thorp JH, Tickner D, Tockner K, Tonkin JD, Valle M, Vitule J, Volk M, Wang D, Wolter C, Worischka S. Maasri A, et al. Among authors: pauls su. Ecol Lett. 2022 Feb;25(2):255-263. doi: 10.1111/ele.13931. Epub 2021 Dec 1. Ecol Lett. 2022. PMID: 34854211 Free article.
Genome size evolution in the diverse insect order Trichoptera.
Heckenhauer J, Frandsen PB, Sproul JS, Li Z, Paule J, Larracuente AM, Maughan PJ, Barker MS, Schneider JV, Stewart RJ, Pauls SU. Heckenhauer J, et al. Among authors: pauls su. Gigascience. 2022 Feb 25;11:giac011. doi: 10.1093/gigascience/giac011. Gigascience. 2022. PMID: 35217860 Free PMC article.
63 results