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Utility of Extrapolating Human S1500+ Genes to the Whole Transcriptome: Tunicamycin Case Study.
Mav D, Phadke DP, Balik-Meisner MR, Merrick BA, Auerbach S, Niemeijer M, Huppelschoten S, Baze A, Parmentier C, Richert L, van de Water B, Shah RR, Paules RS. Mav D, et al. Among authors: paules rs. Bioinform Biol Insights. 2020 Sep 29;14:1177932220952742. doi: 10.1177/1177932220952742. eCollection 2020. Bioinform Biol Insights. 2020. PMID: 33088175 Free PMC article.
A hybrid gene selection approach to create the S1500+ targeted gene sets for use in high-throughput transcriptomics.
Mav D, Shah RR, Howard BE, Auerbach SS, Bushel PR, Collins JB, Gerhold DL, Judson RS, Karmaus AL, Maull EA, Mendrick DL, Merrick BA, Sipes NS, Svoboda D, Paules RS. Mav D, et al. Among authors: paules rs. PLoS One. 2018 Feb 20;13(2):e0191105. doi: 10.1371/journal.pone.0191105. eCollection 2018. PLoS One. 2018. PMID: 29462216 Free PMC article.
BMDExpress 2: enhanced transcriptomic dose-response analysis workflow.
Phillips JR, Svoboda DL, Tandon A, Patel S, Sedykh A, Mav D, Kuo B, Yauk CL, Yang L, Thomas RS, Gift JS, Davis JA, Olszyk L, Merrick BA, Paules RS, Parham F, Saddler T, Shah RR, Auerbach SS. Phillips JR, et al. Among authors: paules rs. Bioinformatics. 2019 May 15;35(10):1780-1782. doi: 10.1093/bioinformatics/bty878. Bioinformatics. 2019. PMID: 30329029 Free PMC article.
The Power of Resolution: Contextualized Understanding of Biological Responses to Liver Injury Chemicals Using High-throughput Transcriptomics and Benchmark Concentration Modeling.
Ramaiahgari SC, Auerbach SS, Saddler TO, Rice JR, Dunlap PE, Sipes NS, DeVito MJ, Shah RR, Bushel PR, Merrick BA, Paules RS, Ferguson SS. Ramaiahgari SC, et al. Among authors: paules rs. Toxicol Sci. 2019 Jun 1;169(2):553-566. doi: 10.1093/toxsci/kfz065. Toxicol Sci. 2019. PMID: 30850835 Free PMC article.
KRAS-retroviral fusion transcripts and gene amplification in arsenic-transformed, human prostate CAsE-PE cancer cells.
Merrick BA, Phadke DP, Bostrom MA, Shah RR, Wright GM, Wang X, Gordon O, Pelch KE, Auerbach SS, Paules RS, DeVito MJ, Waalkes MP, Tokar EJ. Merrick BA, et al. Among authors: paules rs. Toxicol Appl Pharmacol. 2020 Apr 25;397:115017. doi: 10.1016/j.taap.2020.115017. Online ahead of print. Toxicol Appl Pharmacol. 2020. PMID: 32344290 Free PMC article.
Evaluation of 5-day In Vivo Rat Liver and Kidney With High-throughput Transcriptomics for Estimating Benchmark Doses of Apical Outcomes.
Gwinn WM, Auerbach SS, Parham F, Stout MD, Waidyanatha S, Mutlu E, Collins B, Paules RS, Merrick BA, Ferguson S, Ramaiahgari S, Bucher JR, Sparrow B, Toy H, Gorospe J, Machesky N, Shah RR, Balik-Meisner MR, Mav D, Phadke DP, Roberts G, DeVito MJ. Gwinn WM, et al. Among authors: paules rs. Toxicol Sci. 2020 Aug 1;176(2):343-354. doi: 10.1093/toxsci/kfaa081. Toxicol Sci. 2020. PMID: 32492150 Free PMC article.
127 results