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Predictive evolution of metabolic phenotypes using model-designed environments.
Jouhten P, Konstantinidis D, Pereira F, Andrejev S, Grkovska K, Castillo S, Ghiachi P, Beltran G, Almaas E, Mas A, Warringer J, Gonzalez R, Morales P, Patil KR. Jouhten P, et al. Among authors: patil kr. Mol Syst Biol. 2022 Oct;18(10):e10980. doi: 10.15252/msb.202210980. Mol Syst Biol. 2022. PMID: 36201279 Free PMC article.
Do genome-scale models need exact solvers or clearer standards?
Ebrahim A, Almaas E, Bauer E, Bordbar A, Burgard AP, Chang RL, Dräger A, Famili I, Feist AM, Fleming RM, Fong SS, Hatzimanikatis V, Herrgård MJ, Holder A, Hucka M, Hyduke D, Jamshidi N, Lee SY, Le Novère N, Lerman JA, Lewis NE, Ma D, Mahadevan R, Maranas C, Nagarajan H, Navid A, Nielsen J, Nielsen LK, Nogales J, Noronha A, Pal C, Palsson BO, Papin JA, Patil KR, Price ND, Reed JL, Saunders M, Senger RS, Sonnenschein N, Sun Y, Thiele I. Ebrahim A, et al. Among authors: patil kr. Mol Syst Biol. 2015 Oct 14;11(10):831. doi: 10.15252/msb.20156157. Mol Syst Biol. 2015. PMID: 26467284 Free PMC article. No abstract available.
Saccharomyces cerevisiae metabolism in ecological context.
Jouhten P, Ponomarova O, Gonzalez R, Patil KR. Jouhten P, et al. Among authors: patil kr. FEMS Yeast Res. 2016 Nov;16(7):fow080. doi: 10.1093/femsyr/fow080. Epub 2016 Sep 14. FEMS Yeast Res. 2016. PMID: 27634775 Free PMC article. Review.
Metabolic anchor reactions for robust biorefining.
Jouhten P, Huerta-Cepas J, Bork P, Patil KR. Jouhten P, et al. Among authors: patil kr. Metab Eng. 2017 Mar;40:1-4. doi: 10.1016/j.ymben.2017.02.010. Epub 2017 Feb 21. Metab Eng. 2017. PMID: 28232136 Free PMC article.
Yeast Creates a Niche for Symbiotic Lactic Acid Bacteria through Nitrogen Overflow.
Ponomarova O, Gabrielli N, Sévin DC, Mülleder M, Zirngibl K, Bulyha K, Andrejev S, Kafkia E, Typas A, Sauer U, Ralser M, Patil KR. Ponomarova O, et al. Among authors: patil kr. Cell Syst. 2017 Oct 25;5(4):345-357.e6. doi: 10.1016/j.cels.2017.09.002. Epub 2017 Sep 27. Cell Syst. 2017. PMID: 28964698 Free PMC article.
198 results