Paschoal AR - Search Results

1

Genome-Wide Screening and Characterization of Non-Coding RNAs in Coffea canephora.

Lemos SMC, Fonçatti LFC, Guyot R, Paschoal AR, Domingues DS. Lemos SMC, et al. Among authors: paschoal ar. Noncoding RNA. 2020 Sep 11;6(3):39. doi: 10.3390/ncrna6030039. Noncoding RNA. 2020. PMID: 32932872 Free PMC article.

2

cirCodAn: A GHMM-based tool for accurate prediction of coding regions in circRNA.

Barbosa DF, Oliveira LS, Nachtigall PG, Valentini Junior R, de Souza N, Paschoal AR, Kashiwabara AY. Barbosa DF, et al. Among authors: paschoal ar. Adv Protein Chem Struct Biol. 2024;139:289-334. doi: 10.1016/bs.apcsb.2023.11.012. Epub 2024 Feb 17. Adv Protein Chem Struct Biol. 2024. PMID: 38448139

3

CoffeebEST: an integrated resource for Coffea spp expressed sequence tags.

Paschoal AR, Fernandes ED, Silva JC, Lopes FM, Pereira LF, Domingues DS. Paschoal AR, et al. Genet Mol Res. 2014 Dec 19;13(4):10913-20. doi: 10.4238/2014.December.19.13. Genet Mol Res. 2014. PMID: 25526212 Free article.

4

PlanTE-MIR DB: a database for transposable element-related microRNAs in plant genomes.

R Lorenzetti AP, A de Antonio GY, Paschoal AR, Domingues DS. R Lorenzetti AP, et al. Among authors: paschoal ar. Funct Integr Genomics. 2016 May;16(3):235-42. doi: 10.1007/s10142-016-0480-5. Epub 2016 Feb 18. Funct Integr Genomics. 2016. PMID: 26887375

5

ceRNAs in plants: computational approaches and associated challenges for target mimic research.

Paschoal AR, Lozada-Chávez I, Domingues DS, Stadler PF. Paschoal AR, et al. Brief Bioinform. 2018 Nov 27;19(6):1273-1289. doi: 10.1093/bib/bbx058. Brief Bioinform. 2018. PMID: 28575144 Review.

6

Pattern recognition analysis on long noncoding RNAs: a tool for prediction in plants.

Negri TDC, Alves WAL, Bugatti PH, Saito PTM, Domingues DS, Paschoal AR. Negri TDC, et al. Among authors: paschoal ar. Brief Bioinform. 2019 Mar 25;20(2):682-689. doi: 10.1093/bib/bby034. Brief Bioinform. 2019. PMID: 29697740 Review.

7

Functional annotation and distribution overview of RNA families in 27 Streptococcus agalactiae genomes.

Wolf IR, Paschoal AR, Quiroga C, Domingues DS, de Souza RF, Pretto-Giordano LG, Vilas-Boas LA. Wolf IR, et al. Among authors: paschoal ar. BMC Genomics. 2018 Jul 28;19(1):556. doi: 10.1186/s12864-018-4951-z. BMC Genomics. 2018. PMID: 30055586 Free PMC article.

8

PlaNC-TE: a comprehensive knowledgebase of non-coding RNAs and transposable elements in plants.

Pedro DLF, Lorenzetti APR, Domingues DS, Paschoal AR. Pedro DLF, et al. Among authors: paschoal ar. Database (Oxford). 2018 Jan 1;2018:1-7. doi: 10.1093/database/bay078. Database (Oxford). 2018. PMID: 30101318 Free PMC article.

9

An integrated analysis of mRNA and sRNA transcriptional profiles in Coffea arabica L. roots: insights on nitrogen starvation responses.

Dos Santos TB, Soares JDM, Lima JE, Silva JC, Ivamoto ST, Baba VY, Souza SGH, Lorenzetti APR, Paschoal AR, Meda AR, Nishiyama Júnior MY, de Oliveira ÚC, Mokochinski JB, Guyot R, Junqueira-de-Azevedo ILM, Figueira AVO, Mazzafera P, Júnior OR, Vieira LGE, Pereira LFP, Domingues DS. Dos Santos TB, et al. Among authors: paschoal ar. Funct Integr Genomics. 2019 Jan;19(1):151-169. doi: 10.1007/s10142-018-0634-8. Epub 2018 Sep 8. Funct Integr Genomics. 2019. PMID: 30196429

10

mirtronDB: a mirtron knowledge base.

Da Fonseca BHR, Domingues DS, Paschoal AR. Da Fonseca BHR, et al. Among authors: paschoal ar. Bioinformatics. 2019 Oct 1;35(19):3873-3874. doi: 10.1093/bioinformatics/btz153. Bioinformatics. 2019. PMID: 30874795 Free PMC article.

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