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Capturing coevolutionary signals inrepeat proteins.
Espada R, Parra RG, Mora T, Walczak AM, Ferreiro DU. Espada R, et al. Among authors: parra rg. BMC Bioinformatics. 2015 Jul 2;16:207. doi: 10.1186/s12859-015-0648-3. BMC Bioinformatics. 2015. PMID: 26134293 Free PMC article.
Repeat proteins challenge the concept of structural domains.
Espada R, Parra RG, Sippl MJ, Mora T, Walczak AM, Ferreiro DU. Espada R, et al. Among authors: parra rg. Biochem Soc Trans. 2015 Oct;43(5):844-9. doi: 10.1042/BST20150083. Biochem Soc Trans. 2015. PMID: 26517892 Review.
Protein Repeats from First Principles.
Turjanski P, Parra RG, Espada R, Becher V, Ferreiro DU. Turjanski P, et al. Among authors: parra rg. Sci Rep. 2016 Apr 5;6:23959. doi: 10.1038/srep23959. Sci Rep. 2016. PMID: 27044676 Free PMC article.
Inferring repeat-protein energetics from evolutionary information.
Espada R, Parra RG, Mora T, Walczak AM, Ferreiro DU. Espada R, et al. Among authors: parra rg. PLoS Comput Biol. 2017 Jun 15;13(6):e1005584. doi: 10.1371/journal.pcbi.1005584. eCollection 2017 Jun. PLoS Comput Biol. 2017. PMID: 28617812 Free PMC article.
Local frustration around enzyme active sites.
Freiberger MI, Guzovsky AB, Wolynes PG, Parra RG, Ferreiro DU. Freiberger MI, et al. Among authors: parra rg. Proc Natl Acad Sci U S A. 2019 Mar 5;116(10):4037-4043. doi: 10.1073/pnas.1819859116. Epub 2019 Feb 14. Proc Natl Acad Sci U S A. 2019. PMID: 30765513 Free PMC article.
31 results