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Global landscape of cell envelope protein complexes in Escherichia coli.
Babu M, Bundalovic-Torma C, Calmettes C, Phanse S, Zhang Q, Jiang Y, Minic Z, Kim S, Mehla J, Gagarinova A, Rodionova I, Kumar A, Guo H, Kagan O, Pogoutse O, Aoki H, Deineko V, Caufield JH, Holtzapple E, Zhang Z, Vastermark A, Pandya Y, Lai CC, El Bakkouri M, Hooda Y, Shah M, Burnside D, Hooshyar M, Vlasblom J, Rajagopala SV, Golshani A, Wuchty S, F Greenblatt J, Saier M, Uetz P, F Moraes T, Parkinson J, Emili A. Babu M, et al. Among authors: parkinson j. Nat Biotechnol. 2018 Jan;36(1):103-112. doi: 10.1038/nbt.4024. Epub 2017 Nov 27. Nat Biotechnol. 2018. PMID: 29176613 Free PMC article.
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae.
Krogan NJ, Cagney G, Yu H, Zhong G, Guo X, Ignatchenko A, Li J, Pu S, Datta N, Tikuisis AP, Punna T, Peregrín-Alvarez JM, Shales M, Zhang X, Davey M, Robinson MD, Paccanaro A, Bray JE, Sheung A, Beattie B, Richards DP, Canadien V, Lalev A, Mena F, Wong P, Starostine A, Canete MM, Vlasblom J, Wu S, Orsi C, Collins SR, Chandran S, Haw R, Rilstone JJ, Gandi K, Thompson NJ, Musso G, St Onge P, Ghanny S, Lam MH, Butland G, Altaf-Ul AM, Kanaya S, Shilatifard A, O'Shea E, Weissman JS, Ingles CJ, Hughes TR, Parkinson J, Gerstein M, Wodak SJ, Emili A, Greenblatt JF. Krogan NJ, et al. Among authors: parkinson j. Nature. 2006 Mar 30;440(7084):637-43. doi: 10.1038/nature04670. Epub 2006 Mar 22. Nature. 2006. PMID: 16554755
Bacteriome.org--an integrated protein interaction database for E. coli.
Su C, Peregrin-Alvarez JM, Butland G, Phanse S, Fong V, Emili A, Parkinson J. Su C, et al. Among authors: parkinson j. Nucleic Acids Res. 2008 Jan;36(Database issue):D632-6. doi: 10.1093/nar/gkm807. Epub 2007 Oct 16. Nucleic Acids Res. 2008. PMID: 17942431 Free PMC article.
The Modular Organization of Protein Interactions in Escherichia coli.
Peregrín-Alvarez JM, Xiong X, Su C, Parkinson J. Peregrín-Alvarez JM, et al. Among authors: parkinson j. PLoS Comput Biol. 2009 Oct;5(10):e1000523. doi: 10.1371/journal.pcbi.1000523. Epub 2009 Oct 2. PLoS Comput Biol. 2009. PMID: 19798435 Free PMC article.
Genetic interaction maps in Escherichia coli reveal functional crosstalk among cell envelope biogenesis pathways.
Babu M, Díaz-Mejía JJ, Vlasblom J, Gagarinova A, Phanse S, Graham C, Yousif F, Ding H, Xiong X, Nazarians-Armavil A, Alamgir M, Ali M, Pogoutse O, Pe'er A, Arnold R, Michaut M, Parkinson J, Golshani A, Whitfield C, Wodak SJ, Moreno-Hagelsieb G, Greenblatt JF, Emili A. Babu M, et al. Among authors: parkinson j. PLoS Genet. 2011 Nov;7(11):e1002377. doi: 10.1371/journal.pgen.1002377. Epub 2011 Nov 17. PLoS Genet. 2011. PMID: 22125496 Free PMC article.
Quantitative genome-wide genetic interaction screens reveal global epistatic relationships of protein complexes in Escherichia coli.
Babu M, Arnold R, Bundalovic-Torma C, Gagarinova A, Wong KS, Kumar A, Stewart G, Samanfar B, Aoki H, Wagih O, Vlasblom J, Phanse S, Lad K, Yeou Hsiung Yu A, Graham C, Jin K, Brown E, Golshani A, Kim P, Moreno-Hagelsieb G, Greenblatt J, Houry WA, Parkinson J, Emili A. Babu M, et al. Among authors: parkinson j. PLoS Genet. 2014 Feb 20;10(2):e1004120. doi: 10.1371/journal.pgen.1004120. eCollection 2014 Feb. PLoS Genet. 2014. PMID: 24586182 Free PMC article.
Panorama of ancient metazoan macromolecular complexes.
Wan C, Borgeson B, Phanse S, Tu F, Drew K, Clark G, Xiong X, Kagan O, Kwan J, Bezginov A, Chessman K, Pal S, Cromar G, Papoulas O, Ni Z, Boutz DR, Stoilova S, Havugimana PC, Guo X, Malty RH, Sarov M, Greenblatt J, Babu M, Derry WB, Tillier ER, Wallingford JB, Parkinson J, Marcotte EM, Emili A. Wan C, et al. Among authors: parkinson j. Nature. 2015 Sep 17;525(7569):339-44. doi: 10.1038/nature14877. Epub 2015 Sep 7. Nature. 2015. PMID: 26344197 Free PMC article.
915 results