Parida L - Search Results

1

Explainable AI reveals changes in skin microbiome composition linked to phenotypic differences.

Carrieri AP, Haiminen N, Maudsley-Barton S, Gardiner LJ, Murphy B, Mayes AE, Paterson S, Grimshaw S, Winn M, Shand C, Hadjidoukas P, Rowe WPM, Hawkins S, MacGuire-Flanagan A, Tazzioli J, Kenny JG, Parida L, Hoptroff M, Pyzer-Knapp EO. Carrieri AP, et al. Among authors: parida l. Sci Rep. 2021 Feb 25;11(1):4565. doi: 10.1038/s41598-021-83922-6. Sci Rep. 2021. PMID: 33633172 Free PMC article.

2

Assessing pooled BAC and whole genome shotgun strategies for assembly of complex genomes.

Haiminen N, Feltus FA, Parida L. Haiminen N, et al. Among authors: parida l. BMC Genomics. 2011 Apr 15;12:194. doi: 10.1186/1471-2164-12-194. BMC Genomics. 2011. PMID: 21496274 Free PMC article.

3

Evaluation of methods for de novo genome assembly from high-throughput sequencing reads reveals dependencies that affect the quality of the results.

Haiminen N, Kuhn DN, Parida L, Rigoutsos I. Haiminen N, et al. Among authors: parida l. PLoS One. 2011;6(9):e24182. doi: 10.1371/journal.pone.0024182. Epub 2011 Sep 7. PLoS One. 2011. PMID: 21915294 Free PMC article.

4

Discovering patterns in gene order.

Parida L, Haiminen N. Parida L, et al. Methods Mol Biol. 2012;855:431-55. doi: 10.1007/978-1-61779-582-4_16. Methods Mol Biol. 2012. PMID: 22407719 Review.

5

iXora: exact haplotype inferencing and trait association.

Utro F, Haiminen N, Livingstone D 3rd, Cornejo OE, Royaert S, Schnell RJ, Motamayor JC, Kuhn DN, Parida L. Utro F, et al. Among authors: parida l. BMC Genet. 2013 Jun 6;14:48. doi: 10.1186/1471-2156-14-48. BMC Genet. 2013. PMID: 23742238 Free PMC article.

6

SimBA: simulation algorithm to fit extant-population distributions.

Parida L, Haiminen N. Parida L, et al. BMC Bioinformatics. 2015 Mar 14;16:82. doi: 10.1186/s12859-015-0525-0. BMC Bioinformatics. 2015. PMID: 25886895 Free PMC article.

7

Sampling ARG of multiple populations under complex configurations of subdivision and admixture.

Carrieri AP, Utro F, Parida L. Carrieri AP, et al. Among authors: parida l. Bioinformatics. 2016 Apr 1;32(7):1048-56. doi: 10.1093/bioinformatics/btv716. Epub 2015 Dec 7. Bioinformatics. 2016. PMID: 26644417

8

Linear Time Algorithms to Construct Populations Fitting Multiple Constraint Distributions at Genomic Scales.

Siragusa E, Haiminen N, Utro F, Parida L. Siragusa E, et al. Among authors: parida l. IEEE/ACM Trans Comput Biol Bioinform. 2019 Jul-Aug;16(4):1132-1142. doi: 10.1109/TCBB.2017.2760879. Epub 2017 Oct 9. IEEE/ACM Trans Comput Biol Bioinform. 2019. PMID: 28991752

9

Haplotype assembly of autotetraploid potato using integer linear programing.

Siragusa E, Haiminen N, Finkers R, Visser R, Parida L. Siragusa E, et al. Among authors: parida l. Bioinformatics. 2019 Sep 15;35(18):3279-3286. doi: 10.1093/bioinformatics/btz060. Bioinformatics. 2019. PMID: 30689725 Free PMC article.

10

Signal enrichment with strain-level resolution in metagenomes using topological data analysis.

Guzmán-Sáenz A, Haiminen N, Basu S, Parida L. Guzmán-Sáenz A, et al. Among authors: parida l. BMC Genomics. 2019 Apr 4;20(Suppl 2):194. doi: 10.1186/s12864-019-5490-y. BMC Genomics. 2019. PMID: 30967115 Free PMC article.

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