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Comparative exomics of Phalaris cultivars under salt stress.
Haiminen N, Klaas M, Zhou Z, Utro F, Cormican P, Didion T, Jensen C, Mason CE, Barth S, Parida L. Haiminen N, et al. Among authors: parida l. BMC Genomics. 2014;15 Suppl 6(Suppl 6):S18. doi: 10.1186/1471-2164-15-S6-S18. Epub 2014 Oct 17. BMC Genomics. 2014. PMID: 25573273 Free PMC article.
IRiS: construction of ARG networks at genomic scales.
Javed A, Pybus M, Melé M, Utro F, Bertranpetit J, Calafell F, Parida L. Javed A, et al. Among authors: parida l. Bioinformatics. 2011 Sep 1;27(17):2448-50. doi: 10.1093/bioinformatics/btr423. Epub 2011 Jul 15. Bioinformatics. 2011. PMID: 21765095
Discovering patterns in gene order.
Parida L, Haiminen N. Parida L, et al. Methods Mol Biol. 2012;855:431-55. doi: 10.1007/978-1-61779-582-4_16. Methods Mol Biol. 2012. PMID: 22407719 Review.
ARG-based genome-wide analysis of cacao cultivars.
Utro F, Cornejo OE, Livingstone D, Motamayor JC, Parida L. Utro F, et al. Among authors: parida l. BMC Bioinformatics. 2012;13 Suppl 19(Suppl 19):S17. doi: 10.1186/1471-2105-13-S19-S17. Epub 2012 Dec 19. BMC Bioinformatics. 2012. PMID: 23281769 Free PMC article.
The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
Motamayor JC, Mockaitis K, Schmutz J, Haiminen N, Livingstone D 3rd, Cornejo O, Findley SD, Zheng P, Utro F, Royaert S, Saski C, Jenkins J, Podicheti R, Zhao M, Scheffler BE, Stack JC, Feltus FA, Mustiga GM, Amores F, Phillips W, Marelli JP, May GD, Shapiro H, Ma J, Bustamante CD, Schnell RJ, Main D, Gilbert D, Parida L, Kuhn DN. Motamayor JC, et al. Among authors: parida l. Genome Biol. 2013 Jun 3;14(6):r53. doi: 10.1186/gb-2013-14-6-r53. Genome Biol. 2013. PMID: 23731509 Free PMC article.
iXora: exact haplotype inferencing and trait association.
Utro F, Haiminen N, Livingstone D 3rd, Cornejo OE, Royaert S, Schnell RJ, Motamayor JC, Kuhn DN, Parida L. Utro F, et al. Among authors: parida l. BMC Genet. 2013 Jun 6;14:48. doi: 10.1186/1471-2156-14-48. BMC Genet. 2013. PMID: 23742238 Free PMC article.
180 results