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Phage Diving: An Exploration of the Carcharhinid Shark Epidermal Virome.
Hesse RD, Roach M, Kerr EN, Papudeshi B, Lima LFO, Goodman AZ, Hoopes L, Scott M, Meyer L, Huveneers C, Dinsdale EA. Hesse RD, et al. Among authors: papudeshi b. Viruses. 2022 Sep 5;14(9):1969. doi: 10.3390/v14091969. Viruses. 2022. PMID: 36146775 Free PMC article.
Ten simple rules and a template for creating workflows-as-applications.
Roach MJ, Pierce-Ward NT, Suchecki R, Mallawaarachchi V, Papudeshi B, Handley SA, Brown CT, Watson-Haigh NS, Edwards RA. Roach MJ, et al. Among authors: papudeshi b. PLoS Comput Biol. 2022 Dec 15;18(12):e1010705. doi: 10.1371/journal.pcbi.1010705. eCollection 2022 Dec. PLoS Comput Biol. 2022. PMID: 36520686 Free PMC article. No abstract available.
Emergent community architecture despite distinct diversity in the global whale shark (Rhincodon typus) epidermal microbiome.
Doane MP, Reed MB, McKerral J, Farias Oliveira Lima L, Morris M, Goodman AZ, Johri S, Papudeshi B, Dillon T, Turnlund AC, Peterson M, Mora M, de la Parra Venegas R, Pillans R, Rohner CA, Pierce SJ, Legaspi CG, Araujo G, Ramirez-Macias D, Edwards RA, Dinsdale EA. Doane MP, et al. Among authors: papudeshi b. Sci Rep. 2023 Aug 7;13(1):12747. doi: 10.1038/s41598-023-39184-5. Sci Rep. 2023. PMID: 37550406 Free PMC article.
Host interactions of novel Crassvirales species belonging to multiple families infecting bacterial host, Bacteroides cellulosilyticus WH2.
Papudeshi B, Vega AA, Souza C, Giles SK, Mallawaarachchi V, Roach MJ, An M, Jacobson N, McNair K, Fernanda Mora M, Pastrana K, Boling L, Leigh C, Harker C, Plewa WS, Grigson SR, Bouras G, Decewicz P, Luque A, Droit L, Handley SA, Wang D, Segall AM, Dinsdale EA, Edwards RA. Papudeshi B, et al. Microb Genom. 2023 Sep;9(9):001100. doi: 10.1099/mgen.0.001100. Microb Genom. 2023. PMID: 37665209 Free PMC article.
Phables: from fragmented assemblies to high-quality bacteriophage genomes.
Mallawaarachchi V, Roach MJ, Decewicz P, Papudeshi B, Giles SK, Grigson SR, Bouras G, Hesse RD, Inglis LK, Hutton ALK, Dinsdale EA, Edwards RA. Mallawaarachchi V, et al. Among authors: papudeshi b. Bioinformatics. 2023 Oct 3;39(10):btad586. doi: 10.1093/bioinformatics/btad586. Bioinformatics. 2023. PMID: 37738590 Free PMC article.
21 results