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GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics.
Zvyagin M, Brace A, Hippe K, Deng Y, Zhang B, Bohorquez CO, Clyde A, Kale B, Perez-Rivera D, Ma H, Mann CM, Irvin M, Pauloski JG, Ward L, Hayot-Sasson V, Emani M, Foreman S, Xie Z, Lin D, Shukla M, Nie W, Romero J, Dallago C, Vahdat A, Xiao C, Gibbs T, Foster I, Davis JJ, Papka ME, Brettin T, Stevens R, Anandkumar A, Vishwanath V, Ramanathan A. Zvyagin M, et al. Among authors: papka me. bioRxiv [Preprint]. 2022 Nov 23:2022.10.10.511571. doi: 10.1101/2022.10.10.511571. bioRxiv. 2022. PMID: 36451881 Free PMC article. Preprint.
Linking scientific instruments and computation: Patterns, technologies, and experiences.
Vescovi R, Chard R, Saint ND, Blaiszik B, Pruyne J, Bicer T, Lavens A, Liu Z, Papka ME, Narayanan S, Schwarz N, Chard K, Foster IT. Vescovi R, et al. Among authors: papka me. Patterns (N Y). 2022 Oct 14;3(10):100606. doi: 10.1016/j.patter.2022.100606. eCollection 2022 Oct 14. Patterns (N Y). 2022. PMID: 36277824 Free PMC article.
Visualizing large, heterogeneous data in hybrid-reality environments.
Reda K, Febretti A, Knoll A, Aurisano J, Leigh J, Johnson A, Papka ME, Hereld M. Reda K, et al. Among authors: papka me. IEEE Comput Graph Appl. 2013 Jul-Aug;33(4):38-48. doi: 10.1109/MCG.2013.37. IEEE Comput Graph Appl. 2013. PMID: 24808058
Runtime visualization of the human arterial tree.
Insley JA, Papka ME, Dong S, Karniadakis G, Karonis NT. Insley JA, et al. Among authors: papka me. IEEE Trans Vis Comput Graph. 2007 Jul-Aug;13(4):810-21. doi: 10.1109/TVCG.2007.1017. IEEE Trans Vis Comput Graph. 2007. PMID: 17495339