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HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis.
Kulakovskiy IV, Vorontsov IE, Yevshin IS, Sharipov RN, Fedorova AD, Rumynskiy EI, Medvedeva YA, Magana-Mora A, Bajic VB, Papatsenko DA, Kolpakov FA, Makeev VJ. Kulakovskiy IV, et al. Among authors: papatsenko da. Nucleic Acids Res. 2018 Jan 4;46(D1):D252-D259. doi: 10.1093/nar/gkx1106. Nucleic Acids Res. 2018. PMID: 29140464 Free PMC article.
Analysis of Transcriptional Variability in a Large Human iPSC Library Reveals Genetic and Non-genetic Determinants of Heterogeneity.
Carcamo-Orive I, Hoffman GE, Cundiff P, Beckmann ND, D'Souza SL, Knowles JW, Patel A, Hendry C, Papatsenko D, Abbasi F, Reaven GM, Whalen S, Lee P, Shahbazi M, Henrion MYR, Zhu K, Wang S, Roussos P, Schadt EE, Pandey G, Chang R, Quertermous T, Lemischka I. Carcamo-Orive I, et al. Among authors: papatsenko d. Cell Stem Cell. 2022 Oct 6;29(10):1505. doi: 10.1016/j.stem.2022.08.011. Cell Stem Cell. 2022. PMID: 36206733 Free article. No abstract available.
An Esrrb and Nanog Cell Fate Regulatory Module Controlled by Feed Forward Loop Interactions.
Sevilla A, Papatsenko D, Mazloom AR, Xu H, Vasileva A, Unwin RD, LeRoy G, Chen EY, Garrett-Bakelman FE, Lee DF, Trinite B, Webb RL, Wang Z, Su J, Gingold J, Melnick A, Garcia BA, Whetton AD, MacArthur BD, Ma'ayan A, Lemischka IR. Sevilla A, et al. Among authors: papatsenko d. Front Cell Dev Biol. 2021 Mar 19;9:630067. doi: 10.3389/fcell.2021.630067. eCollection 2021. Front Cell Dev Biol. 2021. PMID: 33816475 Free PMC article.
Restraining Lysosomal Activity Preserves Hematopoietic Stem Cell Quiescence and Potency.
Liang R, Arif T, Kalmykova S, Kasianov A, Lin M, Menon V, Qiu J, Bernitz JM, Moore K, Lin F, Benson DL, Tzavaras N, Mahajan M, Papatsenko D, Ghaffari S. Liang R, et al. Among authors: papatsenko d. Cell Stem Cell. 2020 Mar 5;26(3):359-376.e7. doi: 10.1016/j.stem.2020.01.013. Epub 2020 Feb 27. Cell Stem Cell. 2020. PMID: 32109377 Free PMC article.
Direct reprogramming of fibroblasts into antigen-presenting dendritic cells.
Rosa FF, Pires CF, Kurochkin I, Ferreira AG, Gomes AM, Palma LG, Shaiv K, Solanas L, Azenha C, Papatsenko D, Schulz O, Reis e Sousa C, Pereira CF. Rosa FF, et al. Among authors: papatsenko d. Sci Immunol. 2018 Dec 7;3(30):eaau4292. doi: 10.1126/sciimmunol.aau4292. Sci Immunol. 2018. PMID: 30530727
Cooperative Transcription Factor Induction Mediates Hemogenic Reprogramming.
Gomes AM, Kurochkin I, Chang B, Daniel M, Law K, Satija N, Lachmann A, Wang Z, Ferreira L, Ma'ayan A, Chen BK, Papatsenko D, Lemischka IR, Moore KA, Pereira CF. Gomes AM, et al. Among authors: papatsenko d. Cell Rep. 2018 Dec 4;25(10):2821-2835.e7. doi: 10.1016/j.celrep.2018.11.032. Cell Rep. 2018. PMID: 30517869 Free PMC article.
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