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Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API.
Desvignes T, Loher P, Eilbeck K, Ma J, Urgese G, Fromm B, Sydes J, Aparicio-Puerta E, Barrera V, Espín R, Thibord F, Bofill-De Ros X, Londin E, Telonis AG, Ficarra E, Friedländer MR, Postlethwait JH, Rigoutsos I, Hackenberg M, Vlachos IS, Halushka MK, Pantano L. Desvignes T, et al. Among authors: pantano l. Bioinformatics. 2020 Feb 1;36(3):698-703. doi: 10.1093/bioinformatics/btz675. Bioinformatics. 2020. PMID: 31504201 Free PMC article.
A highly expressed miR-101 isomiR is a functional silencing small RNA.
Llorens F, Bañez-Coronel M, Pantano L, del Río JA, Ferrer I, Estivill X, Martí E. Llorens F, et al. Among authors: pantano l. BMC Genomics. 2013 Feb 15;14:104. doi: 10.1186/1471-2164-14-104. BMC Genomics. 2013. PMID: 23414127 Free PMC article.
Microarray and deep sequencing cross-platform analysis of the mirRNome and isomiR variation in response to epidermal growth factor.
Llorens F, Hummel M, Pantano L, Pastor X, Vivancos A, Castillo E, Mattlin H, Ferrer A, Ingham M, Noguera M, Kofler R, Dohm JC, Pluvinet R, Bayés M, Himmelbauer H, del Rio JA, Martí E, Sumoy L. Llorens F, et al. Among authors: pantano l. BMC Genomics. 2013 Jun 1;14:371. doi: 10.1186/1471-2164-14-371. BMC Genomics. 2013. PMID: 23724959 Free PMC article.
Viewing RNA-seq data on the entire human genome.
Weitz EM, Pantano L, Zhu J, Upton B, Busby B. Weitz EM, et al. Among authors: pantano l. F1000Res. 2017 Apr 28;6:596. doi: 10.12688/f1000research.9762.1. eCollection 2017. F1000Res. 2017. PMID: 28979763 Free PMC article.
Visualization of the small RNA transcriptome using seqclusterViz.
Pantano L, Pantano F, Marti E, Ho Sui S. Pantano L, et al. Among authors: pantano f. F1000Res. 2019 Feb 28;8:ISCB Comm J-232. doi: 10.12688/f1000research.18142.2. eCollection 2019. F1000Res. 2019. PMID: 30984380 Free PMC article.
76 results