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Page 1
Minimum information guidelines for experiments structurally characterizing intrinsically disordered protein regions.
Mészáros B, Hatos A, Palopoli N, Quaglia F, Salladini E, Van Roey K, Arthanari H, Dosztányi Z, Felli IC, Fischer PD, Hoch JC, Jeffries CM, Longhi S, Maiani E, Orchard S, Pancsa R, Papaleo E, Pierattelli R, Piovesan D, Pritisanac I, Tenorio L, Viennet T, Tompa P, Vranken W, Tosatto SCE, Davey NE. Mészáros B, et al. Among authors: palopoli n. Nat Methods. 2023 Sep;20(9):1291-1303. doi: 10.1038/s41592-023-01915-x. Epub 2023 Jul 3. Nat Methods. 2023. PMID: 37400558 Review.
"Protein" no longer means what it used to.
Parisi G, Palopoli N, Tosatto SCE, Fornasari MS, Tompa P. Parisi G, et al. Among authors: palopoli n. Curr Res Struct Biol. 2021 Jul 7;3:146-152. doi: 10.1016/j.crstbi.2021.06.002. eCollection 2021. Curr Res Struct Biol. 2021. PMID: 34308370 Free PMC article. Review.
ELM-the Eukaryotic Linear Motif resource-2024 update.
Kumar M, Michael S, Alvarado-Valverde J, Zeke A, Lazar T, Glavina J, Nagy-Kanta E, Donagh JM, Kalman ZE, Pascarelli S, Palopoli N, Dobson L, Suarez CF, Van Roey K, Krystkowiak I, Griffin JE, Nagpal A, Bhardwaj R, Diella F, Mészáros B, Dean K, Davey NE, Pancsa R, Chemes LB, Gibson TJ. Kumar M, et al. Among authors: palopoli n. Nucleic Acids Res. 2024 Jan 5;52(D1):D442-D455. doi: 10.1093/nar/gkad1058. Nucleic Acids Res. 2024. PMID: 37962385 Free PMC article.
Critical assessment of protein intrinsic disorder prediction.
Necci M, Piovesan D; CAID Predictors; DisProt Curators; Tosatto SCE. Necci M, et al. Nat Methods. 2021 May;18(5):472-481. doi: 10.1038/s41592-021-01117-3. Epub 2021 Apr 19. Nat Methods. 2021. PMID: 33875885 Free PMC article.
Second ISCB Latin American Student Council Symposium (LA-SCS) 2016.
Monzon AM, Hasenahuer MA, Mancini E, Coimbra N, Cravero F, Cáceres-Molina J, Ramírez-Sarmiento CA, Palopoli N, Meysman P, Parra RG. Monzon AM, et al. Among authors: palopoli n. F1000Res. 2017 Aug 16;6:ISCB Comm J-1491. doi: 10.12688/f1000research.12321.1. eCollection 2017. F1000Res. 2017. PMID: 28928937 Free PMC article.
ELM-the eukaryotic linear motif resource in 2020.
Kumar M, Gouw M, Michael S, Sámano-Sánchez H, Pancsa R, Glavina J, Diakogianni A, Valverde JA, Bukirova D, Čalyševa J, Palopoli N, Davey NE, Chemes LB, Gibson TJ. Kumar M, et al. Among authors: palopoli n. Nucleic Acids Res. 2020 Jan 8;48(D1):D296-D306. doi: 10.1093/nar/gkz1030. Nucleic Acids Res. 2020. PMID: 31680160 Free PMC article.
DisProt: intrinsic protein disorder annotation in 2020.
Hatos A, Hajdu-Soltész B, Monzon AM, Palopoli N, Álvarez L, Aykac-Fas B, Bassot C, Benítez GI, Bevilacqua M, Chasapi A, Chemes L, Davey NE, Davidović R, Dunker AK, Elofsson A, Gobeill J, Foutel NSG, Sudha G, Guharoy M, Horvath T, Iglesias V, Kajava AV, Kovacs OP, Lamb J, Lambrughi M, Lazar T, Leclercq JY, Leonardi E, Macedo-Ribeiro S, Macossay-Castillo M, Maiani E, Manso JA, Marino-Buslje C, Martínez-Pérez E, Mészáros B, Mičetić I, Minervini G, Murvai N, Necci M, Ouzounis CA, Pajkos M, Paladin L, Pancsa R, Papaleo E, Parisi G, Pasche E, Barbosa Pereira PJ, Promponas VJ, Pujols J, Quaglia F, Ruch P, Salvatore M, Schad E, Szabo B, Szaniszló T, Tamana S, Tantos A, Veljkovic N, Ventura S, Vranken W, Dosztányi Z, Tompa P, Tosatto SCE, Piovesan D. Hatos A, et al. Among authors: palopoli n. Nucleic Acids Res. 2020 Jan 8;48(D1):D269-D276. doi: 10.1093/nar/gkz975. Nucleic Acids Res. 2020. PMID: 31713636 Free PMC article.
Impact of protein conformational diversity on AlphaFold predictions.
Saldaño T, Escobedo N, Marchetti J, Zea DJ, Mac Donagh J, Velez Rueda AJ, Gonik E, García Melani A, Novomisky Nechcoff J, Salas MN, Peters T, Demitroff N, Fernandez Alberti S, Palopoli N, Fornasari MS, Parisi G. Saldaño T, et al. Among authors: palopoli n. Bioinformatics. 2022 May 13;38(10):2742-2748. doi: 10.1093/bioinformatics/btac202. Bioinformatics. 2022. PMID: 35561203
33 results