Palmer KL - Search Results

1

Recurrent urinary tract infection and estrogen shape the taxonomic ecology and function of the postmenopausal urogenital microbiome.

Neugent ML, Kumar A, Hulyalkar NV, Lutz KC, Nguyen VH, Fuentes JL, Zhang C, Nguyen A, Sharon BM, Kuprasertkul A, Arute AP, Ebrahimzadeh T, Natesan N, Xing C, Shulaev V, Li Q, Zimmern PE, Palmer KL, De Nisco NJ. Neugent ML, et al. Among authors: palmer kl. Cell Rep Med. 2022 Oct 18;3(10):100753. doi: 10.1016/j.xcrm.2022.100753. Epub 2022 Sep 30. Cell Rep Med. 2022. PMID: 36182683 Free PMC article.

2

Direct Detection of Tissue-Resident Bacteria and Chronic Inflammation in the Bladder Wall of Postmenopausal Women with Recurrent Urinary Tract Infection.

De Nisco NJ, Neugent M, Mull J, Chen L, Kuprasertkul A, de Souza Santos M, Palmer KL, Zimmern P, Orth K. De Nisco NJ, et al. Among authors: palmer kl. J Mol Biol. 2019 Oct 4;431(21):4368-4379. doi: 10.1016/j.jmb.2019.04.008. Epub 2019 Apr 17. J Mol Biol. 2019. PMID: 31002774 Free PMC article. Review.

3

Detection of Tissue-resident Bacteria in Bladder Biopsies by 16S rRNA Fluorescence In Situ Hybridization.

Neugent ML, Gadhvi J, Palmer KL, Zimmern PE, De Nisco NJ. Neugent ML, et al. Among authors: palmer kl. J Vis Exp. 2019 Oct 18;(152). doi: 10.3791/60458. J Vis Exp. 2019. PMID: 31680675

4

Hybrid De Novo Genome Assembly for the Generation of Complete Genomes of Urinary Bacteria using Short- and Long-read Sequencing Technologies.

Sharon BM, Hulyalkar NV, Nguyen VH, Zimmern PE, Palmer KL, De Nisco NJ. Sharon BM, et al. Among authors: palmer kl. J Vis Exp. 2021 Aug 20;(174). doi: 10.3791/62872. J Vis Exp. 2021. PMID: 34487123

5

An expectation-maximization algorithm for estimating proportions of deletions among bacterial populations with application to study antibiotic resistance gene transfer in Enterococcus faecalis.

Zhang Y, Zhang C, Huo W, Wang X, Zhang M, Palmer K, Chen M. Zhang Y, et al. Mar Life Sci Technol. 2023;5(1):28-43. doi: 10.1007/s42995-022-00144-z. Epub 2023 Jan 31. Mar Life Sci Technol. 2023. PMID: 36744155 Free PMC article.

6

Vancomycin Resistance in Enterococcus faecium from the Dallas, Texas, Area Is Conferred Predominantly on pRUM-Like Plasmids.

Islam M, Sharon B, Abaragu A, Sistu H, Akins RL, Palmer K. Islam M, et al. mSphere. 2023 Apr 20;8(2):e0002423. doi: 10.1128/msphere.00024-23. Epub 2023 Mar 20. mSphere. 2023. PMID: 36939336 Free PMC article.

7

Functional and genetic adaptations contributing to Enterococcus faecalis persistence in the female urinary tract.

Sharon BM, Arute AP, Nguyen A, Tiwari S, Bonthu SSR, Hulyalkar NV, Neugent ML, Araya DP, Dillon NA, Zimmern PE, Palmer KL, De Nisco NJ. Sharon BM, et al. Among authors: palmer kl. bioRxiv [Preprint]. 2023 May 18:2023.05.18.541374. doi: 10.1101/2023.05.18.541374. bioRxiv. 2023. PMID: 37293065 Free PMC article. Preprint.

8

Inter-species diversity and functional genomic analyses of closed genome assemblies of clinically isolated, megaplasmid-containing Enterococcus raffinosus Er676 and ATCC49464.

Sharon BM, Hulyalkar NV, Zimmern PE, Palmer KL, De Nisco NJ. Sharon BM, et al. Among authors: palmer kl. Access Microbiol. 2023 Jun 12;5(6):acmi000508.v3. doi: 10.1099/acmi.0.000508.v3. eCollection 2023. Access Microbiol. 2023. PMID: 37424546 Free PMC article.

9

Genetic and functional enrichments associated with Enterococcus faecalis isolated from the urinary tract.

Sharon BM, Arute AP, Nguyen A, Tiwari S, Reddy Bonthu SS, Hulyalkar NV, Neugent ML, Palacios Araya D, Dillon NA, Zimmern PE, Palmer KL, De Nisco NJ. Sharon BM, et al. Among authors: palmer kl. mBio. 2023 Nov 14;14(6):e0251523. doi: 10.1128/mbio.02515-23. Online ahead of print. mBio. 2023. PMID: 37962362 Free PMC article.

10

Genome sequences of seven bacterial isolates collected from soil as part of a microbiology lab course.

Sharon B, Ebraimzadeh T, Dahl H, Avadhanam N, Rajendran D, Abaragu A, Nguyen D, Phan L, Ramjee C, Thai M, Vragel G; Spring 2019 and Fall 2019 BIOL3520 Working Groups; Mehta I, Palmer K. Sharon B, et al. Microbiol Resour Announc. 2024 Jan 17;13(1):e0035723. doi: 10.1128/MRA.00357-23. Epub 2023 Dec 1. Microbiol Resour Announc. 2024. PMID: 38038466 Free PMC article.

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