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Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy.
Larivière D, Abueg L, Brajuka N, Gallardo-Alba C, Grüning B, Ko BJ, Ostrovsky A, Palmada-Flores M, Pickett BD, Rabbani K, Antunes A, Balacco JR, Chaisson MJP, Cheng H, Collins J, Couture M, Denisova A, Fedrigo O, Gallo GR, Giani AM, Gooder GM, Horan K, Jain N, Johnson C, Kim H, Lee C, Marques-Bonet T, O'Toole B, Rhie A, Secomandi S, Sozzoni M, Tilley T, Uliano-Silva M, van den Beek M, Williams RW, Waterhouse RM, Phillippy AM, Jarvis ED, Schatz MC, Nekrutenko A, Formenti G. Larivière D, et al. Among authors: palmada flores m. Nat Biotechnol. 2024 Mar;42(3):367-370. doi: 10.1038/s41587-023-02100-3. Nat Biotechnol. 2024. PMID: 38278971 No abstract available.
Genomic insights into the Montseny brook newt (Calotriton arnoldi), a Critically Endangered glacial relict.
Talavera A, Palmada-Flores M, Burriel-Carranza B, Valbuena-Ureña E, Mochales-Riaño G, Adams DC, Tejero-Cicuéndez H, Soler-Membrives A, Amat F, Guinart D, Carbonell F, Obon E, Marquès-Bonet T, Carranza S. Talavera A, et al. Among authors: palmada flores m. iScience. 2023 Dec 12;27(1):108665. doi: 10.1016/j.isci.2023.108665. eCollection 2024 Jan 19. iScience. 2023. PMID: 38226169 Free PMC article.
The genome sequence of the lesser treble-bar moth, Aplocera efformata (Guenée, 1857).
Boyes D; University of Oxford and Wytham Woods Genome Acquisition Lab; Darwin Tree of Life Barcoding collective; Wellcome Sanger Institute Tree of Life programme; Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective; Tree of Life Core Informatics collective; Palmada-Flores M; Darwin Tree of Life Consortium. Boyes D, et al. Among authors: palmada flores m. Wellcome Open Res. 2022 Dec 15;7:303. doi: 10.12688/wellcomeopenres.18595.1. eCollection 2022. Wellcome Open Res. 2022. PMID: 37942213 Free PMC article.
Scalable, accessible, and reproducible reference genome assembly and evaluation in Galaxy.
Larivière D, Abueg L, Brajuka N, Gallardo-Alba C, Grüning B, Ko BJ, Ostrovsky A, Palmada-Flores M, Pickett BD, Rabbani K, Balacco JR, Chaisson M, Cheng H, Collins J, Denisova A, Fedrigo O, Gallo GR, Giani AM, Gooder GM, Jain N, Johnson C, Kim H, Lee C, Marques-Bonet T, O'Toole B, Rhie A, Secomandi S, Sozzoni M, Tilley T, Uliano-Silva M, van den Beek M, Waterhouse RM, Phillippy AM, Jarvis ED, Schatz MC, Nekrutenko A, Formenti G. Larivière D, et al. Among authors: palmada flores m. bioRxiv [Preprint]. 2023 Jun 30:2023.06.28.546576. doi: 10.1101/2023.06.28.546576. bioRxiv. 2023. PMID: 37425881 Free PMC article. Updated. Preprint.
Real-time genomics for One Health.
Urban L, Perlas A, Francino O, Martí-Carreras J, Muga BA, Mwangi JW, Boykin Okalebo L, Stanton JL, Black A, Waipara N, Fontsere C, Eccles D, Urel H, Reska T, Morales HE, Palmada-Flores M, Marques-Bonet T, Watsa M, Libke Z, Erkenswick G, van Oosterhout C. Urban L, et al. Among authors: palmada flores m. Mol Syst Biol. 2023 Aug 8;19(8):e11686. doi: 10.15252/msb.202311686. Epub 2023 Jun 16. Mol Syst Biol. 2023. PMID: 37325891 Free PMC article. Review.
Y chromosome sequence and epigenomic reconstruction across human populations.
Esteller-Cucala P, Palmada-Flores M, Kuderna LFK, Fontsere C, Serres-Armero A, Dabad M, Torralvo M, Faella A, Ferrández-Peral L, Llovera L, Fornas O, Julià E, Ramírez E, González I, Hecht J, Lizano E, Juan D, Marquès-Bonet T. Esteller-Cucala P, et al. Among authors: palmada flores m. Commun Biol. 2023 Jun 9;6(1):623. doi: 10.1038/s42003-023-05004-9. Commun Biol. 2023. PMID: 37296226 Free PMC article.