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SumoPred-PLM: human SUMOylation and SUMO2/3 sites Prediction using Pre-trained Protein Language Model.
NAR Genom Bioinform. 2024 Feb 7;6(1):lqae011. doi: 10.1093/nargab/lqae011. eCollection 2024 Mar.
NAR Genom Bioinform. 2024.
PMID: 38327870
Free PMC article.
LMPhosSite: A Deep Learning-Based Approach for General Protein Phosphorylation Site Prediction Using Embeddings from the Local Window Sequence and Pretrained Protein Language Model.
Pakhrin SC, Pokharel S, Pratyush P, Chaudhari M, Ismail HD, Kc DB.
Pakhrin SC, et al.
J Proteome Res. 2023 Aug 4;22(8):2548-2557. doi: 10.1021/acs.jproteome.2c00667. Epub 2023 Jul 17.
J Proteome Res. 2023.
PMID: 37459437
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LMNglyPred: prediction of human N-linked glycosylation sites using embeddings from a pre-trained protein language model.
Pakhrin SC, Pokharel S, Aoki-Kinoshita KF, Beck MR, Dam TK, Caragea D, Kc DB.
Pakhrin SC, et al.
Glycobiology. 2023 Jun 3;33(5):411-422. doi: 10.1093/glycob/cwad033.
Glycobiology. 2023.
PMID: 37067908
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Deep Learning-Based Advances In Protein Posttranslational Modification Site and Protein Cleavage Prediction.
Pakhrin SC, Pokharel S, Saigo H, Kc DB.
Pakhrin SC, et al.
Methods Mol Biol. 2022;2499:285-322. doi: 10.1007/978-1-0716-2317-6_15.
Methods Mol Biol. 2022.
PMID: 35696087
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DeepNGlyPred: A Deep Neural Network-Based Approach for Human N-Linked Glycosylation Site Prediction.
Pakhrin SC, Aoki-Kinoshita KF, Caragea D, Kc DB.
Pakhrin SC, et al.
Molecules. 2021 Dec 2;26(23):7314. doi: 10.3390/molecules26237314.
Molecules. 2021.
PMID: 34885895
Free PMC article.
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Deep Learning-Based Advances in Protein Structure Prediction.
Pakhrin SC, Shrestha B, Adhikari B, Kc DB.
Pakhrin SC, et al.
Int J Mol Sci. 2021 May 24;22(11):5553. doi: 10.3390/ijms22115553.
Int J Mol Sci. 2021.
PMID: 34074028
Free PMC article.
Review.
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