Paek E - Search Results

1

Proteogenomic landscape of human pancreatic ductal adenocarcinoma in an Asian population reveals tumor cell-enriched and immune-rich subtypes.

Hyeon DY, Nam D, Han Y, Kim DK, Kim G, Kim D, Bae J, Back S, Mun DG, Madar IH, Lee H, Kim SJ, Kim H, Hyun S, Kim CR, Choi SA, Kim YR, Jeong J, Jeon S, Choo YW, Lee KB, Kwon W, Choi S, Goo T, Park T, Suh YA, Kim H, Ku JL, Kim MS, Paek E, Park D, Jung K, Baek SH, Jang JY, Hwang D, Lee SW. Hyeon DY, et al. Among authors: paek e. Nat Cancer. 2023 Feb;4(2):290-307. doi: 10.1038/s43018-022-00479-7. Epub 2022 Dec 22. Nat Cancer. 2023. PMID: 36550235

2

Common Repository of FBS Proteins (cRFP) To Be Added to a Search Database for Mass Spectrometric Analysis of Cell Secretome.

Shin J, Kwon Y, Lee S, Na S, Hong EY, Ju S, Jung HG, Kaushal P, Shin S, Back JH, Choi SY, Kim EH, Lee SJ, Park YE, Ahn HS, Ahn Y, Kabir MH, Park SJ, Yang WS, Yeom J, Bang OY, Ha CW, Lee JW, Kang UB, Kim HJ, Park KS, Lee JE, Lee JE, Kim JY, Kim KP, Kim Y, Hirano H, Yi EC, Cho JY, Paek E, Lee C. Shin J, et al. Among authors: paek e. J Proteome Res. 2019 Oct 4;18(10):3800-3806. doi: 10.1021/acs.jproteome.9b00475. Epub 2019 Sep 10. J Proteome Res. 2019. PMID: 31475827

3

Strategy for comprehensive identification of post-translational modifications in cellular proteins, including low abundant modifications: application to glyceraldehyde-3-phosphate dehydrogenase.

Seo J, Jeong J, Kim YM, Hwang N, Paek E, Lee KJ. Seo J, et al. Among authors: paek e. J Proteome Res. 2008 Feb;7(2):587-602. doi: 10.1021/pr700657y. J Proteome Res. 2008. PMID: 18183946

4

CIFTER: automated charge-state determination for peptide tandem mass spectra.

Na S, Paek E, Lee C. Na S, et al. Among authors: paek e. Anal Chem. 2008 Mar 1;80(5):1520-8. doi: 10.1021/ac702038q. Epub 2008 Feb 2. Anal Chem. 2008. PMID: 18247484

5

The protein-disulfide isomerase DsbC cooperates with SurA and DsbA in the assembly of the essential β-barrel protein LptD.

Denoncin K, Vertommen D, Paek E, Collet JF. Denoncin K, et al. Among authors: paek e. J Biol Chem. 2010 Sep 17;285(38):29425-33. doi: 10.1074/jbc.M110.119321. Epub 2010 Jul 7. J Biol Chem. 2010. PMID: 20615876 Free PMC article.

6

Isotopic peak intensity ratio based algorithm for determination of isotopic clusters and monoisotopic masses of polypeptides from high-resolution mass spectrometric data.

Park K, Yoon JY, Lee S, Paek E, Park H, Jung HJ, Lee SW. Park K, et al. Among authors: paek e. Anal Chem. 2008 Oct 1;80(19):7294-303. doi: 10.1021/ac800913b. Epub 2008 Aug 28. Anal Chem. 2008. PMID: 18754627

7

Estimating influence of cofragmentation on peptide quantification and identification in iTRAQ experiments by simulating multiplexed spectra.

Li H, Hwang KB, Mun DG, Kim H, Lee H, Lee SW, Paek E. Li H, et al. Among authors: paek e. J Proteome Res. 2014 Jul 3;13(7):3488-97. doi: 10.1021/pr500060d. Epub 2014 Jun 23. J Proteome Res. 2014. PMID: 24918111

8

Compact variant-rich customized sequence database and a fast and sensitive database search for efficient proteogenomic analyses.

Park H, Bae J, Kim H, Kim S, Kim H, Mun DG, Joh Y, Lee W, Chae S, Lee S, Kim HK, Hwang D, Lee SW, Paek E. Park H, et al. Among authors: paek e. Proteomics. 2014 Dec;14(23-24):2742-9. doi: 10.1002/pmic.201400225. Epub 2014 Nov 19. Proteomics. 2014. PMID: 25316439

9

ACTG: novel peptide mapping onto gene models.

Choi S, Kim H, Paek E. Choi S, et al. Among authors: paek e. Bioinformatics. 2017 Apr 15;33(8):1218-1220. doi: 10.1093/bioinformatics/btw787. Bioinformatics. 2017. PMID: 28031186

10

Evaluating the effect of database inflation in proteogenomic search on sensitive and reliable peptide identification.

Li H, Joh YS, Kim H, Paek E, Lee SW, Hwang KB. Li H, et al. Among authors: paek e. BMC Genomics. 2016 Dec 22;17(Suppl 13):1031. doi: 10.1186/s12864-016-3327-5. BMC Genomics. 2016. PMID: 28155652 Free PMC article.

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