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A Simple Standard for Sharing Ontological Mappings (SSSOM).
Matentzoglu N, Balhoff JP, Bello SM, Bizon C, Brush M, Callahan TJ, Chute CG, Duncan WD, Evelo CT, Gabriel D, Graybeal J, Gray A, Gyori BM, Haendel M, Harmse H, Harris NL, Harrow I, Hegde HB, Hoyt AL, Hoyt CT, Jiao D, Jiménez-Ruiz E, Jupp S, Kim H, Koehler S, Liener T, Long Q, Malone J, McLaughlin JA, McMurry JA, Moxon S, Munoz-Torres MC, Osumi-Sutherland D, Overton JA, Peters B, Putman T, Queralt-Rosinach N, Shefchek K, Solbrig H, Thessen A, Tudorache T, Vasilevsky N, Wagner AH, Mungall CJ. Matentzoglu N, et al. Among authors: overton ja. Database (Oxford). 2022 May 25;2022:baac035. doi: 10.1093/database/baac035. Database (Oxford). 2022. PMID: 35616100 Free PMC article.
The Ontology for Biomedical Investigations.
Bandrowski A, Brinkman R, Brochhausen M, Brush MH, Bug B, Chibucos MC, Clancy K, Courtot M, Derom D, Dumontier M, Fan L, Fostel J, Fragoso G, Gibson F, Gonzalez-Beltran A, Haendel MA, He Y, Heiskanen M, Hernandez-Boussard T, Jensen M, Lin Y, Lister AL, Lord P, Malone J, Manduchi E, McGee M, Morrison N, Overton JA, Parkinson H, Peters B, Rocca-Serra P, Ruttenberg A, Sansone SA, Scheuermann RH, Schober D, Smith B, Soldatova LN, Stoeckert CJ Jr, Taylor CF, Torniai C, Turner JA, Vita R, Whetzel PL, Zheng J. Bandrowski A, et al. Among authors: overton ja. PLoS One. 2016 Apr 29;11(4):e0154556. doi: 10.1371/journal.pone.0154556. eCollection 2016. PLoS One. 2016. PMID: 27128319 Free PMC article.
Identification of errors in the IEDB using ontologies.
Vita R, Overton JA, Peters B. Vita R, et al. Among authors: overton ja. Database (Oxford). 2018 Jan 1;2018:bay005. doi: 10.1093/database/bay005. Database (Oxford). 2018. PMID: 29688357 Free PMC article.
The Immune Epitope Database (IEDB): 2018 update.
Vita R, Mahajan S, Overton JA, Dhanda SK, Martini S, Cantrell JR, Wheeler DK, Sette A, Peters B. Vita R, et al. Among authors: overton ja. Nucleic Acids Res. 2019 Jan 8;47(D1):D339-D343. doi: 10.1093/nar/gky1006. Nucleic Acids Res. 2019. PMID: 30357391 Free PMC article.
ROBOT: A Tool for Automating Ontology Workflows.
Jackson RC, Balhoff JP, Douglass E, Harris NL, Mungall CJ, Overton JA. Jackson RC, et al. Among authors: overton ja. BMC Bioinformatics. 2019 Jul 29;20(1):407. doi: 10.1186/s12859-019-3002-3. BMC Bioinformatics. 2019. PMID: 31357927 Free PMC article.
A structured model for immune exposures.
Vita R, Overton JA, Dunn P, Cheung KH, Kleinstein SH, Sette A, Peters B. Vita R, et al. Among authors: overton ja. Database (Oxford). 2020 Jan 1;2020:baaa016. doi: 10.1093/database/baaa016. Database (Oxford). 2020. PMID: 32283555 Free PMC article.
38 results