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Exploring microbial functional biodiversity at the protein family level-From metagenomic sequence reads to annotated protein clusters.
Baltoumas FA, Karatzas E, Paez-Espino D, Venetsianou NK, Aplakidou E, Oulas A, Finn RD, Ovchinnikov S, Pafilis E, Kyrpides NC, Pavlopoulos GA. Baltoumas FA, et al. Among authors: oulas a. Front Bioinform. 2023 Mar 3;3:1157956. doi: 10.3389/fbinf.2023.1157956. eCollection 2023. Front Bioinform. 2023. PMID: 36959975 Free PMC article. Review.
Serum miRNAs as biomarkers for the rare types of muscular dystrophy.
Koutsoulidou A, Koutalianos D, Georgiou K, Kakouri AC, Oulas A, Tomazou M, Kyriakides TC, Roos A, Papadimas GK, Papadopoulos C, Kararizou E, Spyrou GM, Zamba Papanicolaou E, Lochmüller H, Phylactou LA. Koutsoulidou A, et al. Among authors: oulas a. Neuromuscul Disord. 2022 Apr;32(4):332-346. doi: 10.1016/j.nmd.2022.03.003. Epub 2022 Mar 11. Neuromuscul Disord. 2022. PMID: 35393236 Free article.
Unraveling genomic variation from next generation sequencing data.
Pavlopoulos GA, Oulas A, Iacucci E, Sifrim A, Moreau Y, Schneider R, Aerts J, Iliopoulos I. Pavlopoulos GA, et al. Among authors: oulas a. BioData Min. 2013 Jul 25;6(1):13. doi: 10.1186/1756-0381-6-13. BioData Min. 2013. PMID: 23885890 Free PMC article.
Prediction of miRNA targets.
Oulas A, Karathanasis N, Louloupi A, Pavlopoulos GA, Poirazi P, Kalantidis K, Iliopoulos I. Oulas A, et al. Methods Mol Biol. 2015;1269:207-29. doi: 10.1007/978-1-4939-2291-8_13. Methods Mol Biol. 2015. PMID: 25577381 Review.
Metagenomic investigation of the geologically unique Hellenic Volcanic Arc reveals a distinctive ecosystem with unexpected physiology.
Oulas A, Polymenakou PN, Seshadri R, Tripp HJ, Mandalakis M, Paez-Espino AD, Pati A, Chain P, Nomikou P, Carey S, Kilias S, Christakis C, Kotoulas G, Magoulas A, Ivanova NN, Kyrpides NC. Oulas A, et al. Environ Microbiol. 2016 Apr;18(4):1122-36. doi: 10.1111/1462-2920.13095. Epub 2015 Dec 21. Environ Microbiol. 2016. PMID: 26487573
Optimized R functions for analysis of ecological community data using the R virtual laboratory (RvLab).
Varsos C, Patkos T, Oulas A, Pavloudi C, Gougousis A, Ijaz UZ, Filiopoulou I, Pattakos N, Vanden Berghe E, Fernández-Guerra A, Faulwetter S, Chatzinikolaou E, Pafilis E, Bekiari C, Doerr M, Arvanitidis C. Varsos C, et al. Among authors: oulas a. Biodivers Data J. 2016 Nov 1;(4):e8357. doi: 10.3897/BDJ.4.e8357. eCollection 2016. Biodivers Data J. 2016. PMID: 27932907 Free PMC article.
Seqenv: linking sequences to environments through text mining.
Sinclair L, Ijaz UZ, Jensen LJ, Coolen MJL, Gubry-Rangin C, Chroňáková A, Oulas A, Pavloudi C, Schnetzer J, Weimann A, Ijaz A, Eiler A, Quince C, Pafilis E. Sinclair L, et al. Among authors: oulas a. PeerJ. 2016 Dec 20;4:e2690. doi: 10.7717/peerj.2690. eCollection 2016. PeerJ. 2016. PMID: 28028456 Free PMC article.
Multi-omics data integration and network-based analysis drives a multiplex drug repurposing approach to a shortlist of candidate drugs against COVID-19.
Tomazou M, Bourdakou MM, Minadakis G, Zachariou M, Oulas A, Karatzas E, Loizidou EM, Kakouri AC, Christodoulou CC, Savva K, Zanti M, Onisiforou A, Afxenti S, Richter J, Christodoulou CG, Kyprianou T, Kolios G, Dietis N, Spyrou GM. Tomazou M, et al. Among authors: oulas a. Brief Bioinform. 2021 Nov 5;22(6):bbab114. doi: 10.1093/bib/bbab114. Brief Bioinform. 2021. PMID: 34009288 Free PMC article.
49 results