Osterman AL - Search Results

1

Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus.

Rodionov DA, Novichkov PS, Stavrovskaya ED, Rodionova IA, Li X, Kazanov MD, Ravcheev DA, Gerasimova AV, Kazakov AE, Kovaleva GY, Permina EA, Laikova ON, Overbeek R, Romine MF, Fredrickson JK, Arkin AP, Dubchak I, Osterman AL, Gelfand MS. Rodionov DA, et al. Among authors: osterman al. BMC Genomics. 2011 Jun 15;12 Suppl 1(Suppl 1):S3. doi: 10.1186/1471-2164-12-S1-S3. BMC Genomics. 2011. PMID: 21810205 Free PMC article.

2

Missing genes in metabolic pathways: a comparative genomics approach.

Osterman A, Overbeek R. Osterman A, et al. Curr Opin Chem Biol. 2003 Apr;7(2):238-51. doi: 10.1016/s1367-5931(03)00027-9. Curr Opin Chem Biol. 2003. PMID: 12714058 Review.

3

Bioinformatics classification and functional analysis of PhoH homologs.

Kazakov AE, Vassieva O, Gelfand MS, Osterman A, Overbeek R. Kazakov AE, et al. In Silico Biol. 2003;3(1-2):3-15. Epub 2002 Dec 30. In Silico Biol. 2003. PMID: 12762842

4

Experimental determination and system level analysis of essential genes in Escherichia coli MG1655.

Gerdes SY, Scholle MD, Campbell JW, Balázsi G, Ravasz E, Daugherty MD, Somera AL, Kyrpides NC, Anderson I, Gelfand MS, Bhattacharya A, Kapatral V, D'Souza M, Baev MV, Grechkin Y, Mseeh F, Fonstein MY, Overbeek R, Barabási AL, Oltvai ZN, Osterman AL. Gerdes SY, et al. Among authors: osterman al. J Bacteriol. 2003 Oct;185(19):5673-84. doi: 10.1128/JB.185.19.5673-5684.2003. J Bacteriol. 2003. PMID: 13129938 Free PMC article.

5

Automatic detection of subsystem/pathway variants in genome analysis.

Ye Y, Osterman A, Overbeek R, Godzik A. Ye Y, et al. Bioinformatics. 2005 Jun;21 Suppl 1:i478-86. doi: 10.1093/bioinformatics/bti1052. Bioinformatics. 2005. PMID: 15961494

6

Comparative genomics of NAD biosynthesis in cyanobacteria.

Gerdes SY, Kurnasov OV, Shatalin K, Polanuyer B, Sloutsky R, Vonstein V, Overbeek R, Osterman AL. Gerdes SY, et al. Among authors: osterman al. J Bacteriol. 2006 Apr;188(8):3012-23. doi: 10.1128/JB.188.8.3012-3023.2006. J Bacteriol. 2006. PMID: 16585762 Free PMC article.

7

Comparative genomics and experimental characterization of N-acetylglucosamine utilization pathway of Shewanella oneidensis.

Yang C, Rodionov DA, Li X, Laikova ON, Gelfand MS, Zagnitko OP, Romine MF, Obraztsova AY, Nealson KH, Osterman AL. Yang C, et al. Among authors: osterman al. J Biol Chem. 2006 Oct 6;281(40):29872-85. doi: 10.1074/jbc.M605052200. Epub 2006 Jul 20. J Biol Chem. 2006. PMID: 16857666 Free article.

8

Genomic identification and in vitro reconstitution of a complete biosynthetic pathway for the osmolyte di-myo-inositol-phosphate.

Rodionov DA, Kurnasov OV, Stec B, Wang Y, Roberts MF, Osterman AL. Rodionov DA, et al. Among authors: osterman al. Proc Natl Acad Sci U S A. 2007 Mar 13;104(11):4279-84. doi: 10.1073/pnas.0609279104. Epub 2007 Mar 2. Proc Natl Acad Sci U S A. 2007. PMID: 17360515 Free PMC article.

9

Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation.

Gupta N, Tanner S, Jaitly N, Adkins JN, Lipton M, Edwards R, Romine M, Osterman A, Bafna V, Smith RD, Pevzner PA. Gupta N, et al. Genome Res. 2007 Sep;17(9):1362-77. doi: 10.1101/gr.6427907. Epub 2007 Aug 9. Genome Res. 2007. PMID: 17690205 Free PMC article.

10

Glycerate 2-kinase of Thermotoga maritima and genomic reconstruction of related metabolic pathways.

Yang C, Rodionov DA, Rodionova IA, Li X, Osterman AL. Yang C, et al. Among authors: osterman al. J Bacteriol. 2008 Mar;190(5):1773-82. doi: 10.1128/JB.01469-07. Epub 2007 Dec 21. J Bacteriol. 2008. PMID: 18156253 Free PMC article.

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