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Case DA, Aktulga HM, Belfon K, Cerutti DS, Cisneros GA, Cruzeiro VWD, Forouzesh N, Giese TJ, Götz AW, Gohlke H, Izadi S, Kasavajhala K, Kaymak MC, King E, Kurtzman T, Lee TS, Li P, Liu J, Luchko T, Luo R, Manathunga M, Machado MR, Nguyen HM, O'Hearn KA, Onufriev AV, Pan F, Pantano S, Qi R, Rahnamoun A, Risheh A, Schott-Verdugo S, Shajan A, Swails J, Wang J, Wei H, Wu X, Wu Y, Zhang S, Zhao S, Zhu Q, Cheatham TE 3rd, Roe DR, Roitberg A, Simmerling C, York DM, Nagan MC, Merz KM Jr. Case DA, et al. Among authors: onufriev av. J Chem Inf Model. 2023 Oct 23;63(20):6183-6191. doi: 10.1021/acs.jcim.3c01153. Epub 2023 Oct 8. J Chem Inf Model. 2023. PMID: 37805934 Free PMC article.
Partially Assembled Nucleosome Structures at Atomic Detail.
Rychkov GN, Ilatovskiy AV, Nazarov IB, Shvetsov AV, Lebedev DV, Konev AY, Isaev-Ivanov VV, Onufriev AV. Rychkov GN, et al. Among authors: onufriev av. Biophys J. 2017 Feb 7;112(3):460-472. doi: 10.1016/j.bpj.2016.10.041. Epub 2016 Dec 28. Biophys J. 2017. PMID: 28038734 Free PMC article.
Heat conductivity of DNA double helix.
Savin AV, Mazo MA, Kikot IP, Manevitch LI, Onufriev AV. Savin AV, et al. Among authors: onufriev av. Phys Rev B Condens Matter Mater Phys. 2011 Jun 15;83(24):245406. doi: 10.1103/PhysRevB.83.245406. Phys Rev B Condens Matter Mater Phys. 2011. PMID: 26207085 Free PMC article.
Two-phase stretching of molecular chains.
Savin AV, Kikot IP, Mazo MA, Onufriev AV. Savin AV, et al. Among authors: onufriev av. Proc Natl Acad Sci U S A. 2013 Feb 19;110(8):2816-21. doi: 10.1073/pnas.1218677110. Epub 2013 Feb 1. Proc Natl Acad Sci U S A. 2013. PMID: 23378631 Free PMC article.
A general probabilistic model of the PCR process.
Saha N, Watson LT, Kafadar K, Onufriev A, Ramakrishnan N, Vasquez-Robinet C, Watkinson J. Saha N, et al. Conf Proc IEEE Eng Med Biol Soc. 2004;2004:2813-6. doi: 10.1109/IEMBS.2004.1403803. Conf Proc IEEE Eng Med Biol Soc. 2004. PMID: 17270862
[New coarse-grained DNA model].
Kikot' IP, Savin AV, Zubova EA, Mzo MA, Gusarova EB, Manevich LI, Onufriev AV. Kikot' IP, et al. Among authors: onufriev av. Biofizika. 2011 May-Jun;56(3):396-402. Biofizika. 2011. PMID: 21786691 Russian.
A novel view of pH titration in biomolecules.
Onufriev A, Case DA, Ullmann GM. Onufriev A, et al. Biochemistry. 2001 Mar 27;40(12):3413-9. doi: 10.1021/bi002740q. Biochemistry. 2001. PMID: 11297406
89 results