Oliveira ASF - Search Results

1

Heme binding to the SARS-CoV-2 spike glycoprotein.

Freeman SL, Oliveira ASF, Gallio AE, Rosa A, Simitakou MK, Arthur CJ, Mulholland AJ, Cherepanov P, Raven EL. Freeman SL, et al. Among authors: oliveira asf. J Biol Chem. 2023 Aug;299(8):105014. doi: 10.1016/j.jbc.2023.105014. Epub 2023 Jul 4. J Biol Chem. 2023. PMID: 37414149 Free PMC article.

2

Simulations support the interaction of the SARS-CoV-2 spike protein with nicotinic acetylcholine receptors.

Oliveira ASF, Ibarra AA, Bermudez I, Casalino L, Gaieb Z, Shoemark DK, Gallagher T, Sessions RB, Amaro RE, Mulholland AJ. Oliveira ASF, et al. bioRxiv [Preprint]. 2020 Sep 14:2020.07.16.206680. doi: 10.1101/2020.07.16.206680. bioRxiv. 2020. PMID: 32743575 Free PMC article. Updated. Preprint.

3

A potential interaction between the SARS-CoV-2 spike protein and nicotinic acetylcholine receptors.

Oliveira ASF, Ibarra AA, Bermudez I, Casalino L, Gaieb Z, Shoemark DK, Gallagher T, Sessions RB, Amaro RE, Mulholland AJ. Oliveira ASF, et al. Biophys J. 2021 Mar 16;120(6):983-993. doi: 10.1016/j.bpj.2021.01.037. Epub 2021 Feb 18. Biophys J. 2021. PMID: 33609494 Free PMC article.

4

Dynamical nonequilibrium molecular dynamics reveals the structural basis for allostery and signal propagation in biomolecular systems.

Oliveira ASF, Ciccotti G, Haider S, Mulholland AJ. Oliveira ASF, et al. Eur Phys J B. 2021;94(7):144. doi: 10.1140/epjb/s10051-021-00157-0. Epub 2021 Jul 20. Eur Phys J B. 2021. PMID: 34720710 Free PMC article. Review.

5

Structural insights in cell-type specific evolution of intra-host diversity by SARS-CoV-2.

Gupta K, Toelzer C, Williamson MK, Shoemark DK, Oliveira ASF, Matthews DA, Almuqrin A, Staufer O, Yadav SKN, Borucu U, Garzoni F, Fitzgerald D, Spatz J, Mulholland AJ, Davidson AD, Schaffitzel C, Berger I. Gupta K, et al. Among authors: oliveira asf. Nat Commun. 2022 Jan 11;13(1):222. doi: 10.1038/s41467-021-27881-6. Nat Commun. 2022. PMID: 35017512 Free PMC article.

6

SARS-CoV-2 spike variants differ in their allosteric responses to linoleic acid.

Oliveira ASF, Shoemark DK, Davidson AD, Berger I, Schaffitzel C, Mulholland AJ. Oliveira ASF, et al. J Mol Cell Biol. 2023 Aug 3;15(3):mjad021. doi: 10.1093/jmcb/mjad021. J Mol Cell Biol. 2023. PMID: 36990513 Free PMC article.

7

Dynamical Nonequilibrium Molecular Dynamics Simulations Identify Allosteric Sites and Positions Associated with Drug Resistance in the SARS-CoV-2 Main Protease.

Chan HTH, Oliveira ASF, Schofield CJ, Mulholland AJ, Duarte F. Chan HTH, et al. Among authors: oliveira asf. JACS Au. 2023 Jun 7;3(6):1767-1774. doi: 10.1021/jacsau.3c00185. eCollection 2023 Jun 26. JACS Au. 2023. PMID: 37384148 Free PMC article.

8

Signal Propagation in the ATPase Domain of Mycobacterium tuberculosis DNA Gyrase from Dynamical-Nonequilibrium Molecular Dynamics Simulations.

Kamsri B, Kamsri P, Punkvang A, Chimprasit A, Saparpakorn P, Hannongbua S, Spencer J, Oliveira ASF, Mulholland AJ, Pungpo P. Kamsri B, et al. Among authors: oliveira asf. Biochemistry. 2024 May 14. doi: 10.1021/acs.biochem.4c00161. Online ahead of print. Biochemistry. 2024. PMID: 38742407

9

Identification of the Initial Steps in Signal Transduction in the α4β2 Nicotinic Receptor: Insights from Equilibrium and Nonequilibrium Simulations.

Oliveira ASF, Shoemark DK, Campello HR, Wonnacott S, Gallagher T, Sessions RB, Mulholland AJ. Oliveira ASF, et al. Structure. 2019 Jul 2;27(7):1171-1183.e3. doi: 10.1016/j.str.2019.04.008. Epub 2019 May 23. Structure. 2019. PMID: 31130483 Free article.

10

A General Mechanism for Signal Propagation in the Nicotinic Acetylcholine Receptor Family.

Oliveira ASF, Edsall CJ, Woods CJ, Bates P, Nunez GV, Wonnacott S, Bermudez I, Ciccotti G, Gallagher T, Sessions RB, Mulholland AJ. Oliveira ASF, et al. J Am Chem Soc. 2019 Dec 26;141(51):19953-19958. doi: 10.1021/jacs.9b09055. Epub 2019 Dec 16. J Am Chem Soc. 2019. PMID: 31805762

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