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Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools.
Greenbaum JA, Andersen PH, Blythe M, Bui HH, Cachau RE, Crowe J, Davies M, Kolaskar AS, Lund O, Morrison S, Mumey B, Ofran Y, Pellequer JL, Pinilla C, Ponomarenko JV, Raghava GP, van Regenmortel MH, Roggen EL, Sette A, Schlessinger A, Sollner J, Zand M, Peters B. Greenbaum JA, et al. Among authors: ofran y. J Mol Recognit. 2007 Mar-Apr;20(2):75-82. doi: 10.1002/jmr.815. J Mol Recognit. 2007. PMID: 17205610 Review.
Antibody specific epitope prediction-emergence of a new paradigm.
Sela-Culang I, Ofran Y, Peters B. Sela-Culang I, et al. Among authors: ofran y. Curr Opin Virol. 2015 Apr;11:98-102. doi: 10.1016/j.coviro.2015.03.012. Epub 2015 Mar 31. Curr Opin Virol. 2015. PMID: 25837466 Free PMC article. Review.
PEASE: predicting B-cell epitopes utilizing antibody sequence.
Sela-Culang I, Ashkenazi S, Peters B, Ofran Y. Sela-Culang I, et al. Among authors: ofran y. Bioinformatics. 2015 Apr 15;31(8):1313-5. doi: 10.1093/bioinformatics/btu790. Epub 2014 Nov 27. Bioinformatics. 2015. PMID: 25432167
Epitome: database of structure-inferred antigenic epitopes.
Schlessinger A, Ofran Y, Yachdav G, Rost B. Schlessinger A, et al. Among authors: ofran y. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D777-80. doi: 10.1093/nar/gkj053. Nucleic Acids Res. 2006. PMID: 16381978 Free PMC article.
156 results