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GABAC: an arithmetic coding solution for genomic data.
Voges J, Paridaens T, Müntefering F, Mainzer LS, Bliss B, Yang M, Ochoa I, Fostier J, Ostermann J, Hernaez M. Voges J, et al. Among authors: ochoa i. Bioinformatics. 2020 Apr 1;36(7):2275-2277. doi: 10.1093/bioinformatics/btz922. Bioinformatics. 2020. PMID: 31830243 Free PMC article.
iDoComp: a compression scheme for assembled genomes.
Ochoa I, Hernaez M, Weissman T. Ochoa I, et al. Bioinformatics. 2015 Mar 1;31(5):626-33. doi: 10.1093/bioinformatics/btu698. Epub 2014 Oct 24. Bioinformatics. 2015. PMID: 25344501 Free PMC article.
Aligned genomic data compression via improved modeling.
Ochoa I, Hernaez M, Weissman T. Ochoa I, et al. J Bioinform Comput Biol. 2014 Dec;12(6):1442002. doi: 10.1142/S0219720014420025. J Bioinform Comput Biol. 2014. PMID: 25395305 Free PMC article.
QVZ: lossy compression of quality values.
Malysa G, Hernaez M, Ochoa I, Rao M, Ganesan K, Weissman T. Malysa G, et al. Among authors: ochoa i. Bioinformatics. 2015 Oct 1;31(19):3122-9. doi: 10.1093/bioinformatics/btv330. Epub 2015 May 28. Bioinformatics. 2015. PMID: 26026138 Free PMC article.
GeneComp, a new reference-based compressor for SAM files.
Long R, Hernaez M, Ochoa I, Weissman T. Long R, et al. Among authors: ochoa i. Proc Data Compress Conf. 2017 Apr;2017:330-339. doi: 10.1109/DCC.2017.76. Epub 2017 May 11. Proc Data Compress Conf. 2017. PMID: 29046896 Free PMC article.
A cluster-based approach to compression of Quality Scores.
Hernaez M, Ochoa I, Weissman T. Hernaez M, et al. Among authors: ochoa i. Proc Data Compress Conf. 2016 Mar-Apr;2016:261-270. doi: 10.1109/DCC.2016.49. Epub 2016 Dec 19. Proc Data Compress Conf. 2016. PMID: 29057318 Free PMC article.
290 results