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The Sequence Read Archive: a decade more of explosive growth.
Katz K, Shutov O, Lapoint R, Kimelman M, Brister JR, O'Sullivan C. Katz K, et al. Nucleic Acids Res. 2022 Jan 7;50(D1):D387-D390. doi: 10.1093/nar/gkab1053. Nucleic Acids Res. 2022. PMID: 34850094 Free PMC article.
Managing Sequence Data.
O'Sullivan C, Busby B, Mizrachi IK. O'Sullivan C, et al. Methods Mol Biol. 2017;1525:79-106. doi: 10.1007/978-1-4939-6622-6_4. Methods Mol Biol. 2017. PMID: 27896718
Using GenBank and SRA.
Sayers EW, O'Sullivan C, Karsch-Mizrachi I. Sayers EW, et al. Methods Mol Biol. 2022;2443:1-25. doi: 10.1007/978-1-0716-2067-0_1. Methods Mol Biol. 2022. PMID: 35037198
A global reference for human genetic variation.
1000 Genomes Project Consortium; Auton A, Brooks LD, Durbin RM, Garrison EP, Kang HM, Korbel JO, Marchini JL, McCarthy S, McVean GA, Abecasis GR. 1000 Genomes Project Consortium, et al. Nature. 2015 Oct 1;526(7571):68-74. doi: 10.1038/nature15393. Nature. 2015. PMID: 26432245 Free PMC article.
Integrative annotation of variants from 1092 humans: application to cancer genomics.
Khurana E, Fu Y, Colonna V, Mu XJ, Kang HM, Lappalainen T, Sboner A, Lochovsky L, Chen J, Harmanci A, Das J, Abyzov A, Balasubramanian S, Beal K, Chakravarty D, Challis D, Chen Y, Clarke D, Clarke L, Cunningham F, Evani US, Flicek P, Fragoza R, Garrison E, Gibbs R, Gümüş ZH, Herrero J, Kitabayashi N, Kong Y, Lage K, Liluashvili V, Lipkin SM, MacArthur DG, Marth G, Muzny D, Pers TH, Ritchie GRS, Rosenfeld JA, Sisu C, Wei X, Wilson M, Xue Y, Yu F; 1000 Genomes Project Consortium; Dermitzakis ET, Yu H, Rubin MA, Tyler-Smith C, Gerstein M. Khurana E, et al. Science. 2013 Oct 4;342(6154):1235587. doi: 10.1126/science.1235587. Science. 2013. PMID: 24092746 Free PMC article.
716 results