O'Grady TM - Search Results

1

Viral reprogramming of host transcription initiation.

Ungerleider NA, Roberts C, O'Grady TM, Nguyen TT, Baddoo M, Wang J, Ishaq E, Concha M, Lam M, Bass J, Nguyen TD, Van Otterloo N, Wickramarachchige-Dona N, Wyczechowska D, Morales M, Ma T, Dong Y, Flemington EK. Ungerleider NA, et al. Among authors: o grady tm. Nucleic Acids Res. 2024 Mar 12:gkae175. doi: 10.1093/nar/gkae175. Online ahead of print. Nucleic Acids Res. 2024. PMID: 38471819

2

Global transcript structure resolution of high gene density genomes through multi-platform data integration.

O'Grady T, Wang X, Höner Zu Bentrup K, Baddoo M, Concha M, Flemington EK. O'Grady T, et al. Nucleic Acids Res. 2016 Oct 14;44(18):e145. doi: 10.1093/nar/gkw629. Epub 2016 Jul 12. Nucleic Acids Res. 2016. PMID: 27407110 Free PMC article.

3

SpliceTools, a suite of downstream RNA splicing analysis tools to investigate mechanisms and impact of alternative splicing.

Flemington EK, Flemington SA, O'Grady TM, Baddoo M, Nguyen T, Dong Y, Ungerleider NA. Flemington EK, et al. Among authors: o grady tm. Nucleic Acids Res. 2023 Apr 24;51(7):e42. doi: 10.1093/nar/gkad111. Nucleic Acids Res. 2023. PMID: 36864749 Free PMC article.

4

New Noncoding Lytic Transcripts Derived from the Epstein-Barr Virus Latency Origin of Replication, oriP, Are Hyperedited, Bind the Paraspeckle Protein, NONO/p54nrb, and Support Viral Lytic Transcription.

Cao S, Moss W, O'Grady T, Concha M, Strong MJ, Wang X, Yu Y, Baddoo M, Zhang K, Fewell C, Lin Z, Dong Y, Flemington EK. Cao S, et al. J Virol. 2015 Jul;89(14):7120-32. doi: 10.1128/JVI.00608-15. Epub 2015 Apr 29. J Virol. 2015. PMID: 25926645 Free PMC article.

5

Analysis of EBV Transcription Using High-Throughput RNA Sequencing.

O'Grady T, Baddoo M, Flemington EK. O'Grady T, et al. Methods Mol Biol. 2017;1532:105-121. doi: 10.1007/978-1-4939-6655-4_7. Methods Mol Biol. 2017. PMID: 27873270 Free article.

6

Reversal of splicing infidelity is a pre-activation step in B cell differentiation.

O'Grady TM, Baddoo M, Flemington SA, Ishaq EY, Ungerleider NA, Flemington EK. O'Grady TM, et al. Front Immunol. 2022 Dec 19;13:1060114. doi: 10.3389/fimmu.2022.1060114. eCollection 2022. Front Immunol. 2022. PMID: 36601126 Free PMC article.

7

Epstein-Barr virus and human herpesvirus 6 detection in a non-Hodgkin's diffuse large B-cell lymphoma cohort by using RNA sequencing.

Strong MJ, O'Grady T, Lin Z, Xu G, Baddoo M, Parsons C, Zhang K, Taylor CM, Flemington EK. Strong MJ, et al. J Virol. 2013 Dec;87(23):13059-62. doi: 10.1128/JVI.02380-13. Epub 2013 Sep 18. J Virol. 2013. PMID: 24049168 Free PMC article.

8

Global bidirectional transcription of the Epstein-Barr virus genome during reactivation.

O'Grady T, Cao S, Strong MJ, Concha M, Wang X, Splinter Bondurant S, Adams M, Baddoo M, Srivastav SK, Lin Z, Fewell C, Yin Q, Flemington EK. O'Grady T, et al. J Virol. 2014 Feb;88(3):1604-16. doi: 10.1128/JVI.02989-13. Epub 2013 Nov 20. J Virol. 2014. PMID: 24257595 Free PMC article.

9

High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project.

Cao S, Strong MJ, Wang X, Moss WN, Concha M, Lin Z, O'Grady T, Baddoo M, Fewell C, Renne R, Flemington EK. Cao S, et al. J Virol. 2015 Jan;89(1):713-29. doi: 10.1128/JVI.02570-14. Epub 2014 Oct 29. J Virol. 2015. PMID: 25355872 Free PMC article.

10

Correction for Strong et al., Epstein-Barr Virus and Human Herpesvirus 6 Detection in a Non-Hodgkin's Diffuse Large B-Cell Lymphoma Cohort by Using RNA Sequencing.

Strong MJ, O'Grady T, Lin Z, Xu G, Baddoo M, Parsons C, Zhang K, Taylor CM, Flemington EK. Strong MJ, et al. J Virol. 2015 Dec 30;90(2):1152. doi: 10.1128/JVI.02772-15. Print 2016 Jan 15. J Virol. 2015. PMID: 26719559 Free PMC article. No abstract available.

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