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Analytical "bake-off" of whole genome sequencing quality for the Genome Russia project using a small cohort for autoimmune hepatitis.
Zhernakova DV, Kliver S, Cherkasov N, Tamazian G, Rotkevich M, Krasheninnikova K, Evsyukov I, Sidorov S, Dobrynin P, Yurchenko AA, Shimansky V, Shcherbakova IV, Glotov AS, Valle DL, Tang M, Shin E, Schwarz KB, O'Brien SJ. Zhernakova DV, et al. PLoS One. 2018 Jul 11;13(7):e0200423. doi: 10.1371/journal.pone.0200423. eCollection 2018. PLoS One. 2018. PMID: 29995946 Free PMC article.
Genome-wide Mycobacterium tuberculosis variation (GMTV) database: a new tool for integrating sequence variations and epidemiology.
Chernyaeva EN, Shulgina MV, Rotkevich MS, Dobrynin PV, Simonov SA, Shitikov EA, Ischenko DS, Karpova IY, Kostryukova ES, Ilina EN, Govorun VM, Zhuravlev VY, Manicheva OA, Yablonsky PK, Isaeva YD, Nosova EY, Mokrousov IV, Vyazovaya AA, Narvskaya OV, Lapidus AL, O'Brien SJ. Chernyaeva EN, et al. BMC Genomics. 2014 Apr 25;15:308. doi: 10.1186/1471-2164-15-308. BMC Genomics. 2014. PMID: 24767249 Free PMC article.
Annotated features of domestic cat - Felis catus genome.
Tamazian G, Simonov S, Dobrynin P, Makunin A, Logachev A, Komissarov A, Shevchenko A, Brukhin V, Cherkasov N, Svitin A, Koepfli KP, Pontius J, Driscoll CA, Blackistone K, Barr C, Goldman D, Antunes A, Quilez J, Lorente-Galdos B, Alkan C, Marques-Bonet T, Menotti-Raymond M, David VA, Narfström K, O'Brien SJ. Tamazian G, et al. Gigascience. 2014 Aug 5;3:13. doi: 10.1186/2047-217X-3-13. eCollection 2014. Gigascience. 2014. PMID: 25143822 Free PMC article.
GWATCH: a web platform for automated gene association discovery analysis.
Svitin A, Malov S, Cherkasov N, Geerts P, Rotkevich M, Dobrynin P, Shevchenko A, Guan L, Troyer J, Hendrickson S, Dilks HH, Oleksyk TK, Donfield S, Gomperts E, Jabs DA, Sezgin E, Van Natta M, Harrigan PR, Brumme ZL, O'Brien SJ. Svitin A, et al. Gigascience. 2014 Nov 5;3:18. doi: 10.1186/2047-217X-3-18. eCollection 2014. Gigascience. 2014. PMID: 25374661 Free PMC article.
Genome-wide Evidence Reveals that African and Eurasian Golden Jackals Are Distinct Species.
Koepfli KP, Pollinger J, Godinho R, Robinson J, Lea A, Hendricks S, Schweizer RM, Thalmann O, Silva P, Fan Z, Yurchenko AA, Dobrynin P, Makunin A, Cahill JA, Shapiro B, Álvares F, Brito JC, Geffen E, Leonard JA, Helgen KM, Johnson WE, O'Brien SJ, Van Valkenburgh B, Wayne RK. Koepfli KP, et al. Curr Biol. 2015 Aug 17;25(16):2158-65. doi: 10.1016/j.cub.2015.06.060. Epub 2015 Jul 30. Curr Biol. 2015. PMID: 26234211 Free article.
Putting Russia on the genome map.
Oleksyk TK, Brukhin V, O'Brien SJ. Oleksyk TK, et al. Science. 2015 Nov 13;350(6262):747. doi: 10.1126/science.350.6262.747-a. Science. 2015. PMID: 26564837 No abstract available.
The Population Origins and Expansion of Feral Cats in Australia.
Spencer PB, Yurchenko AA, David VA, Scott R, Koepfli KP, Driscoll C, O'Brien SJ, Menotti-Raymond M. Spencer PB, et al. J Hered. 2016 Mar;107(2):104-14. doi: 10.1093/jhered/esv095. Epub 2015 Dec 7. J Hered. 2016. PMID: 26647063 Free PMC article.
Genomic legacy of the African cheetah, Acinonyx jubatus.
Dobrynin P, Liu S, Tamazian G, Xiong Z, Yurchenko AA, Krasheninnikova K, Kliver S, Schmidt-Küntzel A, Koepfli KP, Johnson W, Kuderna LF, García-Pérez R, Manuel Md, Godinez R, Komissarov A, Makunin A, Brukhin V, Qiu W, Zhou L, Li F, Yi J, Driscoll C, Antunes A, Oleksyk TK, Eizirik E, Perelman P, Roelke M, Wildt D, Diekhans M, Marques-Bonet T, Marker L, Bhak J, Wang J, Zhang G, O'Brien SJ. Dobrynin P, et al. Genome Biol. 2015 Dec 10;16:277. doi: 10.1186/s13059-015-0837-4. Genome Biol. 2015. PMID: 26653294 Free PMC article.
963 results