Nunn BL - Search Results

1

Assessing Protein Sequence Database Suitability Using De Novo Sequencing.

Johnson RS, Searle BC, Nunn BL, Gilmore JM, Phillips M, Amemiya CT, Heck M, MacCoss MJ. Johnson RS, et al. Among authors: nunn bl. Mol Cell Proteomics. 2020 Jan;19(1):198-208. doi: 10.1074/mcp.TIR119.001752. Epub 2019 Nov 15. Mol Cell Proteomics. 2020. PMID: 31732549 Free PMC article.

2

An Alignment-Free "Metapeptide" Strategy for Metaproteomic Characterization of Microbiome Samples Using Shotgun Metagenomic Sequencing.

May DH, Timmins-Schiffman E, Mikan MP, Harvey HR, Borenstein E, Nunn BL, Noble WS. May DH, et al. Among authors: nunn bl. J Proteome Res. 2016 Aug 5;15(8):2697-705. doi: 10.1021/acs.jproteome.6b00239. Epub 2016 Jul 19. J Proteome Res. 2016. PMID: 27396978 Free PMC article.

3

The Skyline ecosystem: Informatics for quantitative mass spectrometry proteomics.

Pino LK, Searle BC, Bollinger JG, Nunn B, MacLean B, MacCoss MJ. Pino LK, et al. Mass Spectrom Rev. 2020 May;39(3):229-244. doi: 10.1002/mas.21540. Epub 2017 Jul 9. Mass Spectrom Rev. 2020. PMID: 28691345 Free PMC article. Review.

4

A Sectioning and Database Enrichment Approach for Improved Peptide Spectrum Matching in Large, Genome-Guided Protein Sequence Databases.

Kumar P, Johnson JE, Easterly C, Mehta S, Sajulga R, Nunn B, Jagtap PD, Griffin TJ. Kumar P, et al. J Proteome Res. 2020 Jul 2;19(7):2772-2785. doi: 10.1021/acs.jproteome.0c00260. Epub 2020 May 26. J Proteome Res. 2020. PMID: 32396365

5

Sample preparation and processing for planktonic microbial community proteomics.

Morris RM, Nunn BL. Morris RM, et al. Among authors: nunn bl. Methods Enzymol. 2013;531:271-87. doi: 10.1016/B978-0-12-407863-5.00014-9. Methods Enzymol. 2013. PMID: 24060126

6

Integrating Discovery-driven Proteomics and Selected Reaction Monitoring To Develop a Noninvasive Assay for Geoduck Reproductive Maturation.

Timmins-Schiffman EB, Crandall GA, Vadopalas B, Riffle ME, Nunn BL, Roberts SB. Timmins-Schiffman EB, et al. Among authors: nunn bl. J Proteome Res. 2017 Sep 1;16(9):3298-3309. doi: 10.1021/acs.jproteome.7b00288. Epub 2017 Aug 11. J Proteome Res. 2017. PMID: 28730805

7

MS analysis of a dilution series of bacteria:phytoplankton to improve detection of low abundance bacterial peptides.

Timmins-Schiffman E, Mikan MP, Ting YS, Harvey HR, Nunn BL. Timmins-Schiffman E, et al. Among authors: nunn bl. Sci Rep. 2018 Jun 18;8(1):9276. doi: 10.1038/s41598-018-27650-4. Sci Rep. 2018. PMID: 29915279 Free PMC article.

8

Survey of metaproteomics software tools for functional microbiome analysis.

Sajulga R, Easterly C, Riffle M, Mesuere B, Muth T, Mehta S, Kumar P, Johnson J, Gruening BA, Schiebenhoefer H, Kolmeder CA, Fuchs S, Nunn BL, Rudney J, Griffin TJ, Jagtap PD. Sajulga R, et al. Among authors: nunn bl. PLoS One. 2020 Nov 10;15(11):e0241503. doi: 10.1371/journal.pone.0241503. eCollection 2020. PLoS One. 2020. PMID: 33170893 Free PMC article.

9

Differential impacts of individual and combined exposures of deoxynivalenol and zearalenone on the HepaRG human hepatic cell proteome.

Smith MC, Timmins-Schiffman E, Coton M, Coton E, Hymery N, Nunn BL, Madec S. Smith MC, et al. Among authors: nunn bl. J Proteomics. 2018 Feb 20;173:89-98. doi: 10.1016/j.jprot.2017.11.025. Epub 2017 Dec 5. J Proteomics. 2018. PMID: 29208510

10

Tandem mass spectrometry investigation of ADP-ribosylated kemptide.

Hengel SM, Shaffer SA, Nunn BL, Goodlett DR. Hengel SM, et al. Among authors: nunn bl. J Am Soc Mass Spectrom. 2009 Mar;20(3):477-83. doi: 10.1016/j.jasms.2008.10.025. Epub 2008 Nov 17. J Am Soc Mass Spectrom. 2009. PMID: 19070509 Free PMC article.

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