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Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.
J Clin Microbiol. 2024 May 8;62(5):e0157623. doi: 10.1128/jcm.01576-23. Epub 2024 Mar 5.
J Clin Microbiol. 2024.
PMID: 38441926
Free PMC article.
Transforming Shiga toxin-producing Escherichia coli surveillance through whole genome sequencing in food safety practices.
Nouws S, Verhaegen B, Denayer S, Crombé F, Piérard D, Bogaerts B, Vanneste K, Marchal K, Roosens NHC, De Keersmaecker SCJ.
Nouws S, et al.
Front Microbiol. 2023 Jul 13;14:1204630. doi: 10.3389/fmicb.2023.1204630. eCollection 2023.
Front Microbiol. 2023.
PMID: 37520372
Free PMC article.
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Whole Genome Sequencing Provides an Added Value to the Investigation of Staphylococcal Food Poisoning Outbreaks.
Nouws S, Bogaerts B, Verhaegen B, Denayer S, Laeremans L, Marchal K, Roosens NHC, Vanneste K, De Keersmaecker SCJ.
Nouws S, et al.
Front Microbiol. 2021 Nov 2;12:750278. doi: 10.3389/fmicb.2021.750278. eCollection 2021.
Front Microbiol. 2021.
PMID: 34795649
Free PMC article.
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Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods.
Bogaerts B, Nouws S, Verhaegen B, Denayer S, Van Braekel J, Winand R, Fu Q, Crombé F, Piérard D, Marchal K, Roosens NHC, De Keersmaecker SCJ, Vanneste K.
Bogaerts B, et al. Among authors: nouws s.
Microb Genom. 2021 Mar;7(3):mgen000531. doi: 10.1099/mgen.0.000531. Epub 2021 Mar 3.
Microb Genom. 2021.
PMID: 33656437
Free PMC article.
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Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates.
Nouws S, Bogaerts B, Verhaegen B, Denayer S, Piérard D, Marchal K, Roosens NHC, Vanneste K, De Keersmaecker SCJ.
Nouws S, et al.
Sci Rep. 2020 Sep 4;10(1):14649. doi: 10.1038/s41598-020-71207-3.
Sci Rep. 2020.
PMID: 32887913
Free PMC article.
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The Benefits of Whole Genome Sequencing for Foodborne Outbreak Investigation from the Perspective of a National Reference Laboratory in a Smaller Country.
Nouws S, Bogaerts B, Verhaegen B, Denayer S, Crombé F, De Rauw K, Piérard D, Marchal K, Vanneste K, Roosens NHC, De Keersmaecker SCJ.
Nouws S, et al.
Foods. 2020 Aug 1;9(8):1030. doi: 10.3390/foods9081030.
Foods. 2020.
PMID: 32752159
Free PMC article.
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Factors associated with time to breast cancer diagnosis and treatment in unscreened women in Portugal.
Nouws S, Brandão M, Fontes F, Pereira S, Dias T, Ribeiro AI, Lunet N, Peleteiro B.
Nouws S, et al.
Women Health. 2019 Jul;59(6):601-614. doi: 10.1080/03630242.2018.1539430. Epub 2018 Nov 21.
Women Health. 2019.
PMID: 30462571
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