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Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.
Bogaerts B, Van den Bossche A, Verhaegen B, Delbrassinne L, Mattheus W, Nouws S, Godfroid M, Hoffman S, Roosens NHC, De Keersmaecker SCJ, Vanneste K. Bogaerts B, et al. Among authors: nouws s. J Clin Microbiol. 2024 May 8;62(5):e0157623. doi: 10.1128/jcm.01576-23. Epub 2024 Mar 5. J Clin Microbiol. 2024. PMID: 38441926 Free PMC article.
Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods.
Bogaerts B, Nouws S, Verhaegen B, Denayer S, Van Braekel J, Winand R, Fu Q, Crombé F, Piérard D, Marchal K, Roosens NHC, De Keersmaecker SCJ, Vanneste K. Bogaerts B, et al. Among authors: nouws s. Microb Genom. 2021 Mar;7(3):mgen000531. doi: 10.1099/mgen.0.000531. Epub 2021 Mar 3. Microb Genom. 2021. PMID: 33656437 Free PMC article.