Noshay JM - Search Results

1

Quantum biological insights into CRISPR-Cas9 sgRNA efficiency from explainable-AI driven feature engineering.

Noshay JM, Walker T, Alexander WG, Klingeman DM, Romero J, Walker AM, Prates E, Eckert C, Irle S, Kainer D, Jacobson DA. Noshay JM, et al. Nucleic Acids Res. 2023 Oct 27;51(19):10147-10161. doi: 10.1093/nar/gkad736. Nucleic Acids Res. 2023. PMID: 37738140 Free PMC article.

2

Stability of DNA methylation and chromatin accessibility in structurally diverse maize genomes.

Noshay JM, Liang Z, Zhou P, Crisp PA, Marand AP, Hirsch CN, Schmitz RJ, Springer NM. Noshay JM, et al. G3 (Bethesda). 2021 Aug 7;11(8):jkab190. doi: 10.1093/g3journal/jkab190. G3 (Bethesda). 2021. PMID: 34849810 Free PMC article.

3

Prediction of conserved and variable heat and cold stress response in maize using cis-regulatory information.

Zhou P, Enders TA, Myers ZA, Magnusson E, Crisp PA, Noshay JM, Gomez-Cano F, Liang Z, Grotewold E, Greenham K, Springer NM. Zhou P, et al. Among authors: noshay jm. Plant Cell. 2022 Jan 20;34(1):514-534. doi: 10.1093/plcell/koab267. Plant Cell. 2022. PMID: 34735005 Free PMC article.

4

Whole-genome variation of transposable element insertions in a maize diversity panel.

Qiu Y, O'Connor CH, Della Coletta R, Renk JS, Monnahan PJ, Noshay JM, Liang Z, Gilbert A, Anderson SN, McGaugh SE, Springer NM, Hirsch CN. Qiu Y, et al. Among authors: noshay jm. G3 (Bethesda). 2021 Sep 27;11(10):jkab238. doi: 10.1093/g3journal/jkab238. G3 (Bethesda). 2021. PMID: 34568911 Free PMC article.

5

A capture-based assay for detection and characterization of transposon polymorphisms in maize.

Li M, Noshay JM, Dong X, Springer NM, Li Q. Li M, et al. Among authors: noshay jm. G3 (Bethesda). 2021 Jul 14;11(7):jkab138. doi: 10.1093/g3journal/jkab138. G3 (Bethesda). 2021. PMID: 33905487 Free PMC article.

6

Assessing the regulatory potential of transposable elements using chromatin accessibility profiles of maize transposons.

Noshay JM, Marand AP, Anderson SN, Zhou P, Mejia Guerra MK, Lu Z, O'Connor CH, Crisp PA, Hirsch CN, Schmitz RJ, Springer NM. Noshay JM, et al. Genetics. 2021 Mar 3;217(1):1-13. doi: 10.1093/genetics/iyaa003. Genetics. 2021. PMID: 33683350 Free PMC article.

7

Genetic and epigenetic variation in transposable element expression responses to abiotic stress in maize.

Liang Z, Anderson SN, Noshay JM, Crisp PA, Enders TA, Springer NM. Liang Z, et al. Among authors: noshay jm. Plant Physiol. 2021 May 27;186(1):420-433. doi: 10.1093/plphys/kiab073. Plant Physiol. 2021. PMID: 33591319 Free PMC article.

8

Stories that can't be told by SNPs; DNA methylation variation in plant populations.

Noshay JM, Springer NM. Noshay JM, et al. Curr Opin Plant Biol. 2021 Jun;61:101989. doi: 10.1016/j.pbi.2020.101989. Epub 2021 Jan 11. Curr Opin Plant Biol. 2021. PMID: 33445144 Review.

9

Stable unmethylated DNA demarcates expressed genes and their cis-regulatory space in plant genomes.

Crisp PA, Marand AP, Noshay JM, Zhou P, Lu Z, Schmitz RJ, Springer NM. Crisp PA, et al. Among authors: noshay jm. Proc Natl Acad Sci U S A. 2020 Sep 22;117(38):23991-24000. doi: 10.1073/pnas.2010250117. Epub 2020 Sep 2. Proc Natl Acad Sci U S A. 2020. PMID: 32879011 Free PMC article.

10

Meta Gene Regulatory Networks in Maize Highlight Functionally Relevant Regulatory Interactions.

Zhou P, Li Z, Magnusson E, Gomez Cano F, Crisp PA, Noshay JM, Grotewold E, Hirsch CN, Briggs SP, Springer NM. Zhou P, et al. Among authors: noshay jm. Plant Cell. 2020 May;32(5):1377-1396. doi: 10.1105/tpc.20.00080. Epub 2020 Mar 17. Plant Cell. 2020. PMID: 32184350 Free PMC article.

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