Nithin C - Search Results

1

MAPIYA contact map server for identification and visualization of molecular interactions in proteins and biological complexes.

Badaczewska-Dawid AE, Nithin C, Wroblewski K, Kurcinski M, Kmiecik S. Badaczewska-Dawid AE, et al. Among authors: nithin c. Nucleic Acids Res. 2022 Jul 5;50(W1):W474-W482. doi: 10.1093/nar/gkac307. Nucleic Acids Res. 2022. PMID: 35524560 Free PMC article.

2

Genome-wide mapping of SARS-CoV-2 RNA structures identifies therapeutically-relevant elements.

Manfredonia I, Nithin C, Ponce-Salvatierra A, Ghosh P, Wirecki TK, Marinus T, Ogando NS, Snijder EJ, van Hemert MJ, Bujnicki JM, Incarnato D. Manfredonia I, et al. Among authors: nithin c. Nucleic Acids Res. 2020 Dec 16;48(22):12436-12452. doi: 10.1093/nar/gkaa1053. Nucleic Acids Res. 2020. PMID: 33166999 Free PMC article.

3

Constrained peptides mimic a viral suppressor of RNA silencing.

Kuepper A, McLoughlin NM, Neubacher S, Yeste-Vázquez A, Collado Camps E, Nithin C, Mukherjee S, Bethge L, Bujnicki JM, Brock R, Heinrichs S, Grossmann TN. Kuepper A, et al. Among authors: nithin c. Nucleic Acids Res. 2021 Dec 16;49(22):12622-12633. doi: 10.1093/nar/gkab1149. Nucleic Acids Res. 2021. PMID: 34871435 Free PMC article.

4

Probing binding hot spots at protein-RNA recognition sites.

Barik A, Nithin C, Karampudi NB, Mukherjee S, Bahadur RP. Barik A, et al. Among authors: nithin c. Nucleic Acids Res. 2016 Jan 29;44(2):e9. doi: 10.1093/nar/gkv876. Epub 2015 Sep 13. Nucleic Acids Res. 2016. PMID: 26365245 Free PMC article.

5

A non-redundant protein-RNA docking benchmark version 2.0.

Nithin C, Mukherjee S, Bahadur RP. Nithin C, et al. Proteins. 2017 Feb;85(2):256-267. doi: 10.1002/prot.25211. Epub 2016 Dec 2. Proteins. 2017. PMID: 27862282

6

Bioinformatics Tools and Benchmarks for Computational Docking and 3D Structure Prediction of RNA-Protein Complexes.

Nithin C, Ghosh P, Bujnicki JM. Nithin C, et al. Genes (Basel). 2018 Aug 25;9(9):432. doi: 10.3390/genes9090432. Genes (Basel). 2018. PMID: 30149645 Free PMC article. Review.

7

Computational modeling of RNA 3D structure based on experimental data.

Ponce-Salvatierra A, Astha, Merdas K, Nithin C, Ghosh P, Mukherjee S, Bujnicki JM. Ponce-Salvatierra A, et al. Among authors: nithin c. Biosci Rep. 2019 Feb 8;39(2):BSR20180430. doi: 10.1042/BSR20180430. Print 2019 Feb 28. Biosci Rep. 2019. PMID: 30670629 Free PMC article. Review.

8

QRNAS: software tool for refinement of nucleic acid structures.

Stasiewicz J, Mukherjee S, Nithin C, Bujnicki JM. Stasiewicz J, et al. Among authors: nithin c. BMC Struct Biol. 2019 Mar 21;19(1):5. doi: 10.1186/s12900-019-0103-1. BMC Struct Biol. 2019. PMID: 30898165 Free PMC article.

9

A structure-based model for the prediction of protein-RNA binding affinity.

Nithin C, Mukherjee S, Bahadur RP. Nithin C, et al. RNA. 2019 Dec;25(12):1628-1645. doi: 10.1261/rna.071779.119. Epub 2019 Aug 8. RNA. 2019. PMID: 31395671 Free PMC article.

10

Modeling of Three-Dimensional RNA Structures Using SimRNA.

Wirecki TK, Nithin C, Mukherjee S, Bujnicki JM, Boniecki MJ. Wirecki TK, et al. Among authors: nithin c. Methods Mol Biol. 2020;2165:103-125. doi: 10.1007/978-1-0716-0708-4_6. Methods Mol Biol. 2020. PMID: 32621221

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