Nikolski M - Search Results

1

Deep learning model for automatic segmentation of lungs and pulmonary metastasis in small animal MR images.

Lefevre E, Bouilhol E, Chauvière A, Souleyreau W, Derieppe MA, Trotier AJ, Miraux S, Bikfalvi A, Ribot EJ, Nikolski M. Lefevre E, et al. Among authors: nikolski m. Front Bioinform. 2022 Oct 12;2:999700. doi: 10.3389/fbinf.2022.999700. eCollection 2022. Front Bioinform. 2022. PMID: 36304332 Free PMC article.

2

VirHunter: A Deep Learning-Based Method for Detection of Novel RNA Viruses in Plant Sequencing Data.

Sukhorukov G, Khalili M, Gascuel O, Candresse T, Marais-Colombel A, Nikolski M. Sukhorukov G, et al. Among authors: nikolski m. Front Bioinform. 2022 May 13;2:867111. doi: 10.3389/fbinf.2022.867111. eCollection 2022. Front Bioinform. 2022. PMID: 36304258 Free PMC article.

3

THBS1⁺ myeloid cells expand in SLD hepatocellular carcinoma and contribute to immunosuppression and unfavorable prognosis through TREM1.

Giraud J, Chalopin D, Ramel E, Boyer T, Zouine A, Derieppe MA, Larmonier N, Adotevi O, Le Bail B, Blanc JF, Laurent C, Chiche L, Derive M, Nikolski M, Saleh M. Giraud J, et al. Among authors: nikolski m. Cell Rep. 2024 Feb 27;43(2):113773. doi: 10.1016/j.celrep.2024.113773. Epub 2024 Feb 12. Cell Rep. 2024. PMID: 38350444 Free article.

4

DeepSpot: A deep neural network for RNA spot enhancement in single-molecule fluorescence in-situ hybridization microscopy images.

Bouilhol E, Savulescu AF, Lefevre E, Dartigues B, Brackin R, Nikolski M. Bouilhol E, et al. Among authors: nikolski m. Biol Imaging. 2022 Apr 19;2:e4. doi: 10.1017/S2633903X22000034. eCollection 2022. Biol Imaging. 2022. PMID: 38510431 Free PMC article.

5

DIMet: An open-source tool for Differential analysis of targeted Isotope-labeled Metabolomics data.

Galvis J, Guyon J, Dartigues B, Hecht H, Grüning B, Specque F, Soueidan H, Karkar S, Daubon T, Nikolski M. Galvis J, et al. Among authors: nikolski m. Bioinformatics. 2024 Apr 24:btae282. doi: 10.1093/bioinformatics/btae282. Online ahead of print. Bioinformatics. 2024. PMID: 38656970

6

Genetic and epigenetic interplay allows rapid transgenerational adaptation to metal pollution in zebrafish.

Pierron F, Heroin D, Daffe G, Daramy F, Barré A, Bouchez O, Romero-Ramirez A, Gonzalez P, Nikolski M. Pierron F, et al. Among authors: nikolski m. Environ Epigenet. 2022 Oct 22;8(1):dvac022. doi: 10.1093/eep/dvac022. eCollection 2022. Environ Epigenet. 2022. PMID: 36474803 Free PMC article.

7

Sex-specific DNA methylation and transcription of zbtb38 and effects of gene-environment interactions on its natural antisense transcript in zebrafish.

Pierron F, Daramy F, Heroin D, Daffe G, Barré A, Bouchez O, Nikolski M. Pierron F, et al. Among authors: nikolski m. Epigenetics. 2023 Dec;18(1):2260963. doi: 10.1080/15592294.2023.2260963. Epub 2023 Oct 2. Epigenetics. 2023. PMID: 37782752 Free PMC article.

8

Transgenerational endocrine disruptor effects of cadmium in zebrafish and contribution of standing epigenetic variation to adaptation.

Pierron F, Daffe G, Daramy F, Heroin D, Barré A, Bouchez O, Clérendeau C, Romero-Ramirez A, Nikolski M. Pierron F, et al. Among authors: nikolski m. J Hazard Mater. 2023 Aug 5;455:131579. doi: 10.1016/j.jhazmat.2023.131579. Epub 2023 May 4. J Hazard Mater. 2023. PMID: 37163897 Free article.

9

Effects of Lumacaftor-Ivacaftor on Airway Microbiota-Mycobiota and Inflammation in Patients with Cystic Fibrosis Appear To Be Linked to Pseudomonas aeruginosa Chronic Colonization.

Enaud R, Lussac-Sorton F, Charpentier E, Velo-Suárez L, Guiraud J, Bui S, Fayon M, Schaeverbeke T, Nikolski M; LumIvaBiota Study Group; Burgel PR, Héry-Arnaud G, Delhaes L. Enaud R, et al. Among authors: nikolski m. Microbiol Spectr. 2023 Mar 27;11(2):e0225122. doi: 10.1128/spectrum.02251-22. Online ahead of print. Microbiol Spectr. 2023. PMID: 36971560 Free PMC article.

10

Systemic Convergent Multitarget Interactions of Plant Polyphenols Revealed by Affinity-Based Protein Profiling of Bone Cells Using C-Glucosidic Vescal(ag)in-Bearing Chemoproteomic Probes.

Kempf K, Capello Y, Melhem R, Lescoat C, Kempf O, Cornu A, Fremaux I, Chaignepain S, Groppi A, Nikolski M, Deffieux D, Génot E, Quideau S. Kempf K, et al. Among authors: nikolski m. ACS Chem Biol. 2023 Dec 15;18(12):2495-2505. doi: 10.1021/acschembio.3c00440. Epub 2023 Nov 10. ACS Chem Biol. 2023. PMID: 37948120

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