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Structural Basis for a Dual Function ATP Grasp Ligase That Installs Single and Bicyclic ω-Ester Macrocycles in a New Multicore RiPP Natural Product.
Zhao G, Kosek D, Liu HB, Ohlemacher SI, Blackburne B, Nikolskaya A, Makarova KS, Sun J, Barry Iii CE, Koonin EV, Dyda F, Bewley CA. Zhao G, et al. Among authors: nikolskaya a. J Am Chem Soc. 2021 Jun 2;143(21):8056-8068. doi: 10.1021/jacs.1c02316. Epub 2021 May 24. J Am Chem Soc. 2021. PMID: 34028251 Free PMC article.
A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes.
Koonin EV, Fedorova ND, Jackson JD, Jacobs AR, Krylov DM, Makarova KS, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Rogozin IB, Smirnov S, Sorokin AV, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA. Koonin EV, et al. Among authors: nikolskaya an. Genome Biol. 2004;5(2):R7. doi: 10.1186/gb-2004-5-2-r7. Epub 2004 Jan 15. Genome Biol. 2004. PMID: 14759257 Free PMC article.
Expanded diversity of Asgard archaea and their relationships with eukaryotes.
Liu Y, Makarova KS, Huang WC, Wolf YI, Nikolskaya AN, Zhang X, Cai M, Zhang CJ, Xu W, Luo Z, Cheng L, Koonin EV, Li M. Liu Y, et al. Among authors: nikolskaya an. Nature. 2021 May;593(7860):553-557. doi: 10.1038/s41586-021-03494-3. Epub 2021 Apr 28. Nature. 2021. PMID: 33911286
The COG database: an updated version includes eukaryotes.
Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin EV, Krylov DM, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Smirnov S, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA. Tatusov RL, et al. Among authors: nikolskaya an. BMC Bioinformatics. 2003 Sep 11;4:41. doi: 10.1186/1471-2105-4-41. Epub 2003 Sep 11. BMC Bioinformatics. 2003. PMID: 12969510 Free PMC article.
Evolution of eukaryotic gene repertoire and gene structure: discovering the unexpected dynamics of genome evolution.
Rogozin IB, Babenko VN, Fedorova ND, Jackson JD, Jacobs AR, Krylov DM, Makarova KS, Mazumder R, Mekhedov SL, Mirkin BG, Nikolskaya AN, Rao BS, Smirnov S, Sorokin AV, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA, Koonin EV. Rogozin IB, et al. Among authors: nikolskaya an. Cold Spring Harb Symp Quant Biol. 2003;68:293-301. doi: 10.1101/sqb.2003.68.293. Cold Spring Harb Symp Quant Biol. 2003. PMID: 15338629 No abstract available.
39 results