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CellML metadata standards, associated tools and repositories.
Beard DA, Britten R, Cooling MT, Garny A, Halstead MD, Hunter PJ, Lawson J, Lloyd CM, Marsh J, Miller A, Nickerson DP, Nielsen PM, Nomura T, Subramanium S, Wimalaratne SM, Yu T. Beard DA, et al. Among authors: nielsen pm. Philos Trans A Math Phys Eng Sci. 2009 May 28;367(1895):1845-67. doi: 10.1098/rsta.2008.0310. Philos Trans A Math Phys Eng Sci. 2009. PMID: 19380315 Free PMC article.
CellML and associated tools and techniques.
Garny A, Nickerson DP, Cooper J, Weber dos Santos R, Miller AK, McKeever S, Nielsen PM, Hunter PJ. Garny A, et al. Among authors: nielsen pm. Philos Trans A Math Phys Eng Sci. 2008 Sep 13;366(1878):3017-43. doi: 10.1098/rsta.2008.0094. Philos Trans A Math Phys Eng Sci. 2008. PMID: 18579471 Review.
Revision history aware repositories of computational models of biological systems.
Miller AK, Yu T, Britten R, Cooling MT, Lawson J, Cowan D, Garny A, Halstead MD, Hunter PJ, Nickerson DP, Nunns G, Wimalaratne SM, Nielsen PM. Miller AK, et al. Among authors: nielsen pm. BMC Bioinformatics. 2011 Jan 14;12:22. doi: 10.1186/1471-2105-12-22. BMC Bioinformatics. 2011. PMID: 21235804 Free PMC article.
FieldML: concepts and implementation.
Christie GR, Nielsen PM, Blackett SA, Bradley CP, Hunter PJ. Christie GR, et al. Among authors: nielsen pm. Philos Trans A Math Phys Eng Sci. 2009 May 28;367(1895):1869-84. doi: 10.1098/rsta.2009.0025. Philos Trans A Math Phys Eng Sci. 2009. PMID: 19380316 Free PMC article.
CellML 2.0.
Clerx M, Cooling MT, Cooper J, Garny A, Moyle K, Nickerson DP, Nielsen PMF, Sorby H. Clerx M, et al. J Integr Bioinform. 2020 Jul 24;17(2-3):20200021. doi: 10.1515/jib-2020-0021. J Integr Bioinform. 2020. PMID: 32759406 Free PMC article.
The Physiome Model Repository 2.
Yu T, Lloyd CM, Nickerson DP, Cooling MT, Miller AK, Garny A, Terkildsen JR, Lawson J, Britten RD, Hunter PJ, Nielsen PM. Yu T, et al. Among authors: nielsen pm. Bioinformatics. 2011 Mar 1;27(5):743-4. doi: 10.1093/bioinformatics/btq723. Epub 2011 Jan 6. Bioinformatics. 2011. PMID: 21216774
Modular modelling with Physiome standards.
Cooling MT, Nickerson DP, Nielsen PM, Hunter PJ. Cooling MT, et al. Among authors: nielsen pm. J Physiol. 2016 Dec 1;594(23):6817-6831. doi: 10.1113/JP272633. Epub 2016 Aug 29. J Physiol. 2016. PMID: 27353233 Free PMC article.
199 results