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The CellML 1.1 Specification.
Cuellar A, Hedley W, Nelson M, Lloyd C, Halstead M, Bullivant D, Nickerson D, Hunter P, Nielsen P. Cuellar A, et al. Among authors: nielsen p. J Integr Bioinform. 2015 Sep 4;12(2):259. doi: 10.2390/biecoll-jib-2015-259. J Integr Bioinform. 2015. PMID: 26528557
Biophysical annotation and representation of CellML models.
Wimalaratne SM, Halstead MD, Lloyd CM, Crampin EJ, Nielsen PF. Wimalaratne SM, et al. Among authors: nielsen pf. Bioinformatics. 2009 Sep 1;25(17):2263-70. doi: 10.1093/bioinformatics/btp391. Epub 2009 Jun 29. Bioinformatics. 2009. PMID: 19564239
A method for visualizing CellML models.
Wimalaratne SM, Halstead MD, Lloyd CM, Cooling MT, Crampin EJ, Nielsen PF. Wimalaratne SM, et al. Among authors: nielsen pf. Bioinformatics. 2009 Nov 15;25(22):3012-9. doi: 10.1093/bioinformatics/btp495. Epub 2009 Aug 24. Bioinformatics. 2009. PMID: 19703920
CellML: its future, present and past.
Lloyd CM, Halstead MD, Nielsen PF. Lloyd CM, et al. Prog Biophys Mol Biol. 2004 Jun-Jul;85(2-3):433-50. doi: 10.1016/j.pbiomolbio.2004.01.004. Prog Biophys Mol Biol. 2004. PMID: 15142756 Free article. Review.
The CellML Model Repository.
Lloyd CM, Lawson JR, Hunter PJ, Nielsen PF. Lloyd CM, et al. Bioinformatics. 2008 Sep 15;24(18):2122-3. doi: 10.1093/bioinformatics/btn390. Epub 2008 Jul 25. Bioinformatics. 2008. PMID: 18658182
An overview of the CellML API and its implementation.
Miller AK, Marsh J, Reeve A, Garny A, Britten R, Halstead M, Cooper J, Nickerson DP, Nielsen PF. Miller AK, et al. Among authors: nielsen pf. BMC Bioinformatics. 2010 Apr 8;11:178. doi: 10.1186/1471-2105-11-178. BMC Bioinformatics. 2010. PMID: 20377909 Free PMC article.
Toward a curated CellML model repository.
Nickerson D, Stevens C, Halstead M, Hunter P, Nielsen P. Nickerson D, et al. Among authors: nielsen p. Conf Proc IEEE Eng Med Biol Soc. 2006;2006:4237-40. doi: 10.1109/IEMBS.2006.260202. Conf Proc IEEE Eng Med Biol Soc. 2006. PMID: 17947072
The evolution of CellML.
Nielsen PF, Halstead MD. Nielsen PF, et al. Conf Proc IEEE Eng Med Biol Soc. 2004;2004:5411-4. doi: 10.1109/IEMBS.2004.1404512. Conf Proc IEEE Eng Med Biol Soc. 2004. PMID: 17271569
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.
Hucka M, Finney A, Sauro HM, Bolouri H, Doyle JC, Kitano H, Arkin AP, Bornstein BJ, Bray D, Cornish-Bowden A, Cuellar AA, Dronov S, Gilles ED, Ginkel M, Gor V, Goryanin II, Hedley WJ, Hodgman TC, Hofmeyr JH, Hunter PJ, Juty NS, Kasberger JL, Kremling A, Kummer U, Le Novère N, Loew LM, Lucio D, Mendes P, Minch E, Mjolsness ED, Nakayama Y, Nelson MR, Nielsen PF, Sakurada T, Schaff JC, Shapiro BE, Shimizu TS, Spence HD, Stelling J, Takahashi K, Tomita M, Wagner J, Wang J; SBML Forum. Hucka M, et al. Among authors: nielsen pf. Bioinformatics. 2003 Mar 1;19(4):524-31. doi: 10.1093/bioinformatics/btg015. Bioinformatics. 2003. PMID: 12611808
2,558 results