Nielsen M - Search Results

1

Factors Influencing the Prevalence of Resistance-Associated Substitutions in NS5A Protein in Treatment-Naive Patients with Chronic Hepatitis C.

Kyuregyan KK, Kichatova VS, Karlsen AA, Isaeva OV, Solonin SA, Petkov S, Nielsen M, Isaguliants MG, Mikhailov MI. Kyuregyan KK, et al. Among authors: nielsen m. Biomedicines. 2020 Apr 7;8(4):80. doi: 10.3390/biomedicines8040080. Biomedicines. 2020. PMID: 32272736 Free PMC article.

2

Defective Proinsulin Handling Modulates the MHC I Bound Peptidome and Activates the Inflammasome in β-Cells.

Khilji MS, Faridi P, Pinheiro-Machado E, Hoefner C, Dahlby T, Aranha R, Buus S, Nielsen M, Klusek J, Mandrup-Poulsen T, Pandey K, Purcell AW, Marzec MT. Khilji MS, et al. Among authors: nielsen m. Biomedicines. 2022 Mar 30;10(4):814. doi: 10.3390/biomedicines10040814. Biomedicines. 2022. PMID: 35453564 Free PMC article.

3

ArrayPitope: Automated Analysis of Amino Acid Substitutions for Peptide Microarray-Based Antibody Epitope Mapping.

Hansen CS, Østerbye T, Marcatili P, Lund O, Buus S, Nielsen M. Hansen CS, et al. Among authors: nielsen m. PLoS One. 2017 Jan 17;12(1):e0168453. doi: 10.1371/journal.pone.0168453. eCollection 2017. PLoS One. 2017. PMID: 28095436 Free PMC article.

4

NNAlign: a platform to construct and evaluate artificial neural network models of receptor-ligand interactions.

Nielsen M, Andreatta M. Nielsen M, et al. Nucleic Acids Res. 2017 Jul 3;45(W1):W344-W349. doi: 10.1093/nar/gkx276. Nucleic Acids Res. 2017. PMID: 28407117 Free PMC article.

5

Computational Tools for the Identification and Interpretation of Sequence Motifs in Immunopeptidomes.

Alvarez B, Barra C, Nielsen M, Andreatta M. Alvarez B, et al. Among authors: nielsen m. Proteomics. 2018 Jun;18(12):e1700252. doi: 10.1002/pmic.201700252. Epub 2018 Feb 26. Proteomics. 2018. PMID: 29327813 Free PMC article. Review.

6

A Systematic, Unbiased Mapping of CD8⁺ and CD4⁺ T Cell Epitopes in Yellow Fever Vaccinees.

Stryhn A, Kongsgaard M, Rasmussen M, Harndahl MN, Østerbye T, Bassi MR, Thybo S, Gabriel M, Hansen MB, Nielsen M, Christensen JP, Randrup Thomsen A, Buus S. Stryhn A, et al. Among authors: nielsen m. Front Immunol. 2020 Aug 31;11:1836. doi: 10.3389/fimmu.2020.01836. eCollection 2020. Front Immunol. 2020. PMID: 32983097 Free PMC article.

7

Immunoinformatics: Predicting Peptide-MHC Binding.

Nielsen M, Andreatta M, Peters B, Buus S. Nielsen M, et al. Annu Rev Biomed Data Sci. 2020 Jul;3:191-215. doi: 10.1146/annurev-biodatasci-021920-100259. Epub 2020 Apr 27. Annu Rev Biomed Data Sci. 2020. PMID: 37427310 Free PMC article.

8

NNAlign_MA; MHC Peptidome Deconvolution for Accurate MHC Binding Motif Characterization and Improved T-cell Epitope Predictions.

Alvarez B, Reynisson B, Barra C, Buus S, Ternette N, Connelley T, Andreatta M, Nielsen M. Alvarez B, et al. Among authors: nielsen m. Mol Cell Proteomics. 2019 Dec;18(12):2459-2477. doi: 10.1074/mcp.TIR119.001658. Epub 2019 Oct 2. Mol Cell Proteomics. 2019. PMID: 31578220 Free PMC article.

9

MetaPhinder-Identifying Bacteriophage Sequences in Metagenomic Data Sets.

Jurtz VI, Villarroel J, Lund O, Voldby Larsen M, Nielsen M. Jurtz VI, et al. Among authors: nielsen m. PLoS One. 2016 Sep 29;11(9):e0163111. doi: 10.1371/journal.pone.0163111. eCollection 2016. PLoS One. 2016. PMID: 27684958 Free PMC article.

10

GibbsCluster: unsupervised clustering and alignment of peptide sequences.

Andreatta M, Alvarez B, Nielsen M. Andreatta M, et al. Among authors: nielsen m. Nucleic Acids Res. 2017 Jul 3;45(W1):W458-W463. doi: 10.1093/nar/gkx248. Nucleic Acids Res. 2017. PMID: 28407089 Free PMC article.

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