Nielsen LK - Search Results

1

Comparative constraint-based modelling of fruit development across species highlights nitrogen metabolism in the growth-defence trade-off.

Colombié S, Prigent S, Cassan C, Hilbert-Masson G, Renaud C, Dell'Aversana E, Carillo P, Moing A, Beaumont C, Beauvoit B, McCubbin T, Nielsen LK, Gibon Y. Colombié S, et al. Among authors: nielsen lk. Plant J. 2023 Nov;116(3):786-803. doi: 10.1111/tpj.16409. Epub 2023 Aug 2. Plant J. 2023. PMID: 37531405

2

Awakening sleeping beauty: production of propionic acid in Escherichia coli through the sbm operon requires the activity of a methylmalonyl-CoA epimerase.

Gonzalez-Garcia RA, McCubbin T, Wille A, Plan M, Nielsen LK, Marcellin E. Gonzalez-Garcia RA, et al. Among authors: nielsen lk. Microb Cell Fact. 2017 Jul 17;16(1):121. doi: 10.1186/s12934-017-0735-4. Microb Cell Fact. 2017. PMID: 28716098 Free PMC article.

3

Genome-scale model guided design of Propionibacterium for enhanced propionic acid production.

Navone L, McCubbin T, Gonzalez-Garcia RA, Nielsen LK, Marcellin E. Navone L, et al. Among authors: nielsen lk. Metab Eng Commun. 2017 Nov 24;6:1-12. doi: 10.1016/j.meteno.2017.11.001. eCollection 2018 Jun. Metab Eng Commun. 2017. PMID: 29255672 Free PMC article.

4

A Pan-Genome Guided Metabolic Network Reconstruction of Five Propionibacterium Species Reveals Extensive Metabolic Diversity.

McCubbin T, Gonzalez-Garcia RA, Palfreyman RW, Stowers C, Nielsen LK, Marcellin E. McCubbin T, et al. Among authors: nielsen lk. Genes (Basel). 2020 Sep 23;11(10):1115. doi: 10.3390/genes11101115. Genes (Basel). 2020. PMID: 32977700 Free PMC article.

5

multiTFA: a Python package for multi-variate thermodynamics-based flux analysis.

Mahamkali V, McCubbin T, Beber ME, Noor E, Marcellin E, Nielsen LK. Mahamkali V, et al. Among authors: nielsen lk. Bioinformatics. 2021 Sep 29;37(18):3064-3066. doi: 10.1093/bioinformatics/btab151. Bioinformatics. 2021. PMID: 33682879 Free PMC article.

6

Adaptive laboratory evolution of Clostridium autoethanogenum to metabolize CO₂ and H₂ enhances growth rates in chemostat and unravels proteome and metabolome alterations.

Heffernan J, Garcia Gonzalez RA, Mahamkali V, McCubbin T, Daygon D, Liu L, Palfreyman R, Harris A, Koepke M, Valgepea K, Nielsen LK, Marcellin E. Heffernan J, et al. Among authors: nielsen lk. Microb Biotechnol. 2024 Apr;17(4):e14452. doi: 10.1111/1751-7915.14452. Microb Biotechnol. 2024. PMID: 38568755 Free PMC article.

7

AraGEM, a genome-scale reconstruction of the primary metabolic network in Arabidopsis.

de Oliveira Dal'Molin CG, Quek LE, Palfreyman RW, Brumbley SM, Nielsen LK. de Oliveira Dal'Molin CG, et al. Among authors: nielsen lk. Plant Physiol. 2010 Feb;152(2):579-89. doi: 10.1104/pp.109.148817. Epub 2009 Dec 31. Plant Physiol. 2010. PMID: 20044452 Free PMC article.

8

C4GEM, a genome-scale metabolic model to study C4 plant metabolism.

Dal'Molin CG, Quek LE, Palfreyman RW, Brumbley SM, Nielsen LK. Dal'Molin CG, et al. Among authors: nielsen lk. Plant Physiol. 2010 Dec;154(4):1871-85. doi: 10.1104/pp.110.166488. Epub 2010 Oct 25. Plant Physiol. 2010. PMID: 20974891 Free PMC article.

9

Plant genome-scale modeling and implementation.

Dal'molin CG, Quek LE, Palfreyman RW, Nielsen LK. Dal'molin CG, et al. Among authors: nielsen lk. Methods Mol Biol. 2014;1090:317-32. doi: 10.1007/978-1-62703-688-7_19. Methods Mol Biol. 2014. PMID: 24222424

10

NExT: integration of thermodynamic constraints and metabolomics data into a metabolic network.

Martínez VS, Nielsen LK. Martínez VS, et al. Among authors: nielsen lk. Methods Mol Biol. 2014;1191:65-78. doi: 10.1007/978-1-4939-1170-7_4. Methods Mol Biol. 2014. PMID: 25178784

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