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Detection of the Omicron (B.1.1.529) variant of SARS-CoV-2 in aircraft wastewater.
Ahmed W, Bivins A, Smith WJM, Metcalfe S, Stephens M, Jennison AV, Moore FAJ, Bourke J, Schlebusch S, McMahon J, Hewitson G, Nguyen S, Barcelon J, Jackson G, Mueller JF, Ehret J, Hosegood I, Tian W, Wang H, Yang L, Bertsch PM, Tynan J, Thomas KV, Bibby K, Graber TE, Ziels R, Simpson SL. Ahmed W, et al. Among authors: nguyen s. Sci Total Environ. 2022 May 10;820:153171. doi: 10.1016/j.scitotenv.2022.153171. Epub 2022 Jan 17. Sci Total Environ. 2022. PMID: 35051459 Free PMC article.
Rapid diagnosis of Capnocytophaga canimorsus septic shock in an immunocompetent individual using real-time Nanopore sequencing: a case report.
Bialasiewicz S, Duarte TPS, Nguyen SH, Sukumaran V, Stewart A, Appleton S, Pitt ME, Bainomugisa A, Jennison AV, Graham R, Coin LJM, Hajkowicz K. Bialasiewicz S, et al. Among authors: nguyen sh. BMC Infect Dis. 2019 Jul 24;19(1):660. doi: 10.1186/s12879-019-4173-2. BMC Infect Dis. 2019. PMID: 31340776 Free PMC article.
Genomic characterisation reveals a dominant lineage of SARS-CoV-2 in Papua New Guinea.
Palou T, Wilmot M, Duchene S, Porter A, Kemoi J, Suarkia D, Andersson P, Watt A, Sherry N, Seemann T, Sait M, Turharus C, Nguyen S, Schlebusch S, Thompson C, McMahon J, Vaccher S, Lin C, Esoram D, Howden BP, Susapu M. Palou T, et al. Among authors: nguyen s. Virus Evol. 2022 Apr 7;8(1):veac033. doi: 10.1093/ve/veac033. eCollection 2022 Apr. Virus Evol. 2022. PMID: 35875697 Free PMC article.
Real-time demultiplexing Nanopore barcoded sequencing data with npBarcode.
Nguyen SH, Duarte TPS, Coin LJM, Cao MD. Nguyen SH, et al. Bioinformatics. 2017 Dec 15;33(24):3988-3990. doi: 10.1093/bioinformatics/btx537. Bioinformatics. 2017. PMID: 28961965
AVAILABILITY AND IMPLEMENTATION: npBarcode is bundled in Japsa-a Java tools kit for genome analysis, and is freely available at https://github.com/mdcao/japsa. CONTACT: s.nguyen@uq.edu.au or l.coin@imb.uq.edu.au. SUPPLEMENTARY INFORMATION: Supplementary data are ava …
AVAILABILITY AND IMPLEMENTATION: npBarcode is bundled in Japsa-a Java tools kit for genome analysis, and is freely available at https://gith …
2,287 results