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Global network of computational biology communities: ISCB's Regional Student Groups breaking barriers.
Shome S, Parra RG, Fatima N, Monzon AM, Cuypers B, Moosa Y, Coimbra NDR, Assis J, Giner-Delgado C, Dönertaş HM, Cuesta-Astroz Y, Saarunya G, Allali I, Gupta S, Srivastava A, Kalsan M, Valdivia C, J Olguin-Orellana G, Papadimitriou S, Parisi D, Kristensen NP, Rib L, Guebila MB, Bauer E, Zaffaroni G, Bekkar A, Ashano E, Paladin L, Necci M, Moreyra NN, Rydén M, Villalobos-Solís J, Papadopoulos N, Rafael C, Karakulak T, Kaya Y, Gladbach Y, Dhanda SK, Šoštarić N, Alex A, DeBlasio D, Rahman F. Shome S, et al. Among authors: necci m. F1000Res. 2019 Sep 2;8:ISCB Comm J-1574. doi: 10.12688/f1000research.20408.1. eCollection 2019. F1000Res. 2019. PMID: 31508204 Free PMC article.
Exploring Protein Intrinsic Disorder with MobiDB.
Monzon AM, Hatos A, Necci M, Piovesan D, Tosatto SCE. Monzon AM, et al. Among authors: necci m. Methods Mol Biol. 2020;2141:127-143. doi: 10.1007/978-1-0716-0524-0_6. Methods Mol Biol. 2020. PMID: 32696355
MobiDB: intrinsically disordered proteins in 2021.
Piovesan D, Necci M, Escobedo N, Monzon AM, Hatos A, Mičetić I, Quaglia F, Paladin L, Ramasamy P, Dosztányi Z, Vranken WF, Davey NE, Parisi G, Fuxreiter M, Tosatto SCE. Piovesan D, et al. Among authors: necci m. Nucleic Acids Res. 2021 Jan 8;49(D1):D361-D367. doi: 10.1093/nar/gkaa1058. Nucleic Acids Res. 2021. PMID: 33237329 Free PMC article.
An intrinsically disordered proteins community for ELIXIR.
Davey NE, Babu MM, Blackledge M, Bridge A, Capella-Gutierrez S, Dosztanyi Z, Drysdale R, Edwards RJ, Elofsson A, Felli IC, Gibson TJ, Gutmanas A, Hancock JM, Harrow J, Higgins D, Jeffries CM, Le Mercier P, Mészáros B, Necci M, Notredame C, Orchard S, Ouzounis CA, Pancsa R, Papaleo E, Pierattelli R, Piovesan D, Promponas VJ, Ruch P, Rustici G, Romero P, Sarntivijai S, Saunders G, Schuler B, Sharan M, Shields DC, Sussman JL, Tedds JA, Tompa P, Turewicz M, Vondrasek J, Vranken WF, Wallace BA, Wichapong K, Tosatto SCE. Davey NE, et al. Among authors: necci m. F1000Res. 2019 Oct 15;8:ELIXIR-1753. doi: 10.12688/f1000research.20136.1. eCollection 2019. F1000Res. 2019. PMID: 31824649 Free PMC article.
MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins.
Piovesan D, Tabaro F, Paladin L, Necci M, Micetic I, Camilloni C, Davey N, Dosztányi Z, Mészáros B, Monzon AM, Parisi G, Schad E, Sormanni P, Tompa P, Vendruscolo M, Vranken WF, Tosatto SCE. Piovesan D, et al. Among authors: necci m. Nucleic Acids Res. 2018 Jan 4;46(D1):D471-D476. doi: 10.1093/nar/gkx1071. Nucleic Acids Res. 2018. PMID: 29136219 Free PMC article.
Critical assessment of protein intrinsic disorder prediction.
Necci M, Piovesan D; CAID Predictors; DisProt Curators; Tosatto SCE. Necci M, et al. Nat Methods. 2021 May;18(5):472-481. doi: 10.1038/s41592-021-01117-3. Epub 2021 Apr 19. Nat Methods. 2021. PMID: 33875885 Free PMC article.
RepeatsDB in 2021: improved data and extended classification for protein tandem repeat structures.
Paladin L, Bevilacqua M, Errigo S, Piovesan D, Mičetić I, Necci M, Monzon AM, Fabre ML, Lopez JL, Nilsson JF, Rios J, Menna PL, Cabrera M, Buitron MG, Kulik MG, Fernandez-Alberti S, Fornasari MS, Parisi G, Lagares A, Hirsh L, Andrade-Navarro MA, Kajava AV, Tosatto SCE. Paladin L, et al. Among authors: necci m. Nucleic Acids Res. 2021 Jan 8;49(D1):D452-D457. doi: 10.1093/nar/gkaa1097. Nucleic Acids Res. 2021. PMID: 33237313 Free PMC article.
23 results